Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq223 134 1e-26 seq34 82.4 8e-11 >seq223 Length=3708094 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || |||| ||| | || ||||| ||||||||||||||||| | | ||||||| | ||| Sbjct 239826 AGAACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCGCCCATCT 239767 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || ||||| ||| |||| | | ||||||||| || |||||||| ||||| ||| Sbjct 239766 TCTAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCT 239707 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| || | || || ||| || ||||| | || | ||| Sbjct 239706 TGAATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTC 239647 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| ||||| || || ||||| ||||| Sbjct 239646 TTACCGGTTAAAGTCTTCACAAAAATCTGCAT 239615 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||||||||||| || |||||||| || | || |||||| | ||||| | ||| Sbjct 241160 TGAAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAATTGC 241101 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || || | ||||||||| || || ||||| || || || || || || Sbjct 241100 TTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTA 241041 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | |||||| || || ||||| | || | ||| ||||||||| Sbjct 241040 GCCTTCACATTCTCGATAGTATCAGATGCTTCGACTTCCAGGGTGATGGTTTTGCCGGTC 240981 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | ||| || || || |||||||| Sbjct 240980 AGAGTCTTGACAAAGATTTGCAT 240958 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || |||||||| || |||||||| || | | |||||| | ||| Sbjct 238914 AGGACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCT 238855 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| |||||| | || || | ||||||||| || || ||||| || || || Sbjct 238854 TCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCC 238795 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | ||||| || || || || | ||| | |||| Sbjct 238794 TGGATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCGACATCGAGAGTGATGGTC 238735 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||||||| |||||||| || ||||| Sbjct 238734 TTGCCGGTCAAAGTCTTTACGAAGATCTGCAT 238703 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| || |||||||| || | | |||||| | || || ||||| |||||| Sbjct 241610 GTTGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCCAGCTGTTTGCCG 241551 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| ||||| ||||| || |||||||||||||| || || | |||| ||||| Sbjct 241550 GCAAAGATGAGACGCTGTTGGTCTGGCGGAATTCCTTCTTTGTCCTG-AATTTTAGCTTT 241492 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | || || || || ||||| | || | ||| ||||| || | || Sbjct 241491 CACATTTTCAATGGTGTCCGATGCTTCAACTTCCAGGGTGATGGTTTTGCCAGTTAGGGT 241432 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| ||||| |||||||| Sbjct 241431 TTTGACGAAGATTTGCAT 241414 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | || ||| || | || | ||| ||||| || ||||| ||||| || | Sbjct 239157 CCTCCACGAAGTCGAAGAACCAAGTGCAGCGTGGATTCCTTCTGAATATTGTAGTCCGAC 239098 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||| ||||||||| | || || |||||||| || || || Sbjct 239097 AACGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATAAGACGCTGCTGATCTGGCGGG 239038 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||||| || || | |||| ||||| ||| || | || ||| ||| || || Sbjct 239037 ATTCCTTCTTTGTCCTG-AATTTTAGCTTTCACATTTTCGATCGTGTCAGAGGCCTCTAC 238979 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | ||| | || ||||| ||||| || || ||||| || |||||| Sbjct 238978 TTCCAGAGTAATAGTTTTGCCCGTCAATGTCTTAACGAAGATCTGCATT 238930 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| ||| || || ||||| | || ||||| || ||||||||||| || | Sbjct 241413 ACCACCTCGCAGTCTGAGGACAAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCCGA 241354 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| ||| | ||||| | ||||| ||||| | || | | |||||||| || || Sbjct 241353 CAAGGTACGCCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGG 241294 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||||| || || || || || ||| ||||| || ||| | || || || || | Sbjct 241293 GATTCCCTCCTTGTCCTGGATCTTT-GCTTTCACGTTCTCGATGGTGTCGGATGCTTCAA 241235 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||| || ||||||||||| |||||||| |||||||| Sbjct 241234 CCTCCAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 241186 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| ||||| |||||||| || | | ||| || | || || | || || ||| Sbjct 239355 GTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCCAATTGTTTACCG 239296 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || ||||| || || || || ||||||||||| || || ||||| ||| Sbjct 239295 GCAAAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCTTTGTCCTGAATTTTAGCCTTG 239236 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||||| ||| || ||||| | || | ||||| |||||||| || Sbjct 239235 ACATTTTCAATAGTATCGGAGGCTTCGACTTCCAAGGTAATTGTCTTTCCGGTCAAGGTC 239176 Query 64427 TTTACGAAAATTTGCAT 64443 |||||||| |||||||| Sbjct 239175 TTTACGAATATTTGCAT 239159 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| |||||||| ||||| || | | |||||| | ||||| | ||| Sbjct 240045 TGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTGCGACCATCTTCCAACTGT 239986 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || | | || || || || |||||||||||||| || || | |||| Sbjct 239985 TTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGGA-TTTT 239927 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 |||||| || || | || || ||| || ||||| | || | |||||| || || Sbjct 239926 TGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCTTACCAGT 239867 Query 64420 CAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| || ||||||||||| Sbjct 239866 TAACGTTTTCACAAAAATTTGCAT 239843 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| |||||||| || || || | | |||||| | ||||| | |||||| ||| Sbjct 240926 GTAGATTCCTTTTGAATATTATAGTCGGACAAGGTGCGACCATCTTCCAACTGCTTACCG 240867 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | ||||| ||||| || ||||| || ||||| || || || || ||||| Sbjct 240866 GCGAAAATTAATCGCTGTTGGTCTGGTGGAATCCCCTCTTTGTCCTGGATCTTC-GCTTT 240808 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || ||| | || || || || ||||| | || | ||| || ||||||||||| Sbjct 240807 CACGTTCTCAATGGTGTCGGATGCTTCAACTTCCAGGGTGATGGTTTTACCGGTCAAAGT 240748 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| || ||||| ||||| Sbjct 240747 TTTGACAAAAATCTGCAT 240730 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | || |||| ||||| || ||||| || || || ||||| || | Sbjct 239614 ACCTCCACGCAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCAGA 239555 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | ||||| | ||| |||||||| |||| | | || ||||| || || Sbjct 239554 CAAGGTGCGACCATCTTCCAACTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGGGG 239495 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || |||||||| || || || ||| ||| || || | || || ||| || || Sbjct 239494 GATGCCTTCTTTATCCTGAATCTTTGCCTTAACGTTTTCAATGGTGTCGGAGGCCTCGAC 239435 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | || | || || ||||| | |||||| || |||||||||||| Sbjct 239434 TTCCAAGGTGATTGTTTTACCGGTAAGAGTTTTGACAAAAATTTGCATT 239386 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || |||||||| || || | | |||||| | ||||| | ||| || || Sbjct 240267 GTGGATTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTACCC 240208 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | | || ||||| || || ||||||||||| || || || || ||| Sbjct 240207 GCGAAGATTAATCTTTGTTGGTCTGGGGGGATTCCTTCTTTATCCTGAATCTTCGCCTTC 240148 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || ||| || || ||||| | || | |||||| || || |||||| Sbjct 240147 ACATTCTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATGGTCTTACCAGTTAAAGTT 240088 Query 64427 TTTACGAAAATTTGCAT 64443 || || ||||||||||| Sbjct 240087 TTCACAAAAATTTGCAT 240071 >seq34 Length=373266 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 33889 GCTGGCGGAAGCGTGCAAAACTGTGGCGATGGCGTTaaaaaaaTGCCCAGACGGTATGTT 33948 || |||||| || |||||| | ||||| |||||| | |||||||| || | |||||| | Sbjct 46231 GCAGGCGGAGGCTTGCAAATCGGTGGCTATGGCGATGAAAAAATGTCCGAAGGGTATGCT 46172 Query 33949 GGTGGAAACTAAATATGACGGTGAACGTGTCCAGGTGCAC 33988 | ||| | || || |||||||| ||||||||||| ||| Sbjct 46171 GTCGGAGATAAAGTACGACGGTGAGCGTGTCCAGGTCCAC 46132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499641539817680