Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq223 123 2e-23 seq2 86.0 6e-12 >seq223 Length=3708094 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 ||| || ||||| | |||| ||| ||||| | | |||| || || || ||||||||||| Sbjct 241644 GCAACCACCTCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTC 241585 Query 138444 GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503 | || || || ||||| || ||||| |||| | |||| |||||||||||||| || Sbjct 241584 GGACAGGGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGG 241525 Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACT 138562 || || ||||||||||| ||| |||| | ||| | | ||| | |||||| | | | Sbjct 241524 CGGAATTCCTTCTTTGTC-CTGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTT 241466 Query 138563 CCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || | || | ||||| ||||| || ||||| || || || ||||| Sbjct 241465 CAACTTCCAGGGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | || ||||||||||| ||||||||| | Sbjct 240069 CCCCCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGAC 240010 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | |||||||||| | |||| | | ||||| || || || Sbjct 240009 AAGGTGCGACCATCTTCCAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGA 239950 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||||||| ||| | | ||| | |||||||| | ||| || Sbjct 239949 ATTCCTTCTTTGTCCTGGATTTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACT 239890 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||| | ||||| |||||||| ||||| Sbjct 239889 TCCAAGGTGATGGTCTTACCAGTTAACGTTTTCACAAAAATTTGCAT 239843 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||||||||| | | | || ||||||||||||||||| ||| | Sbjct 239841 CCCCCACGGAGACGGAGAACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGAC 239782 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| || || |||||||| || | | | || | | ||| ||||| || || Sbjct 239781 AAGGTGCGCCCATCTTCTAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGA 239722 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| | |||| || | | ||| | |||||||| | || || Sbjct 239721 ATTCCCTCTTTGTCT-TGAATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGAC 239663 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || ||||| || | ||| || |||||||||||||| Sbjct 239662 TTCCAAGGTGATAGTCTTACCGGTTAAAGTCTTCACAAAAATCTGCAT 239615 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | || |||||||| |||||||||||| | Sbjct 239385 CCACCACGTAGACGAAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 239326 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||| | ||||||||||| | |||| ||||||||||| || || || Sbjct 239325 AAGGTACGGCCATCCTCCAATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTGGG 239266 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| |||| | || | | ||| | || |||| | || || Sbjct 239265 ATTCCTTCTTTGTC-CTGAATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGAC 239207 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || | || | || || || |||| || ||||| || || |||||| || Sbjct 239206 TTCCAAGGTAATTGTCTTTCCGGTCAAGGTCTTTACGAATATTTGCATGCCT 239155 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | | || ||||||||||| || |||||| | Sbjct 240956 CCTCCGCGGAGACGGAGAACCAAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCGGAC 240897 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | || ||||||| | |||| ||||||||||| || || Sbjct 240896 AAGGTGCGACCATCTTCCAACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTGGA 240837 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| ||| || ||| | | || | |||||||| | || || Sbjct 240836 ATCCCCTCTTTGTCCTGGATCTTCGCTTTCACGTTCTCAATGGTGTCGGATGCTTCAACT 240777 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| |||| |||||| |||||||||||||| Sbjct 240776 TCCAGGGTGATGGTTTTACCGGTCAAAGTTTTGACAAAAATCTGCAT 240730 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| ||||||||||| | || || ||| || | |||||| || | | Sbjct 238668 GATTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCTTCCAATTGTTTTCCTGCA 238609 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || | | ||| || |||||||| || || |||||||| ||| ||| || | Sbjct 238608 AAAATCAACCTCTGCTGATCCGGAGGGATTCCCTCTTTGTCCTGGATCTTTGCCTTGACG 238549 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| | ||| ||||||| || | |||||| || || || ||||| Sbjct 238548 TTCTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATCGTTTTCCCCGTGAGGGTTTTC 238489 Query 138601 ACAAAAATCTGCATGGCTTAT 138621 ||||| ||||||||| |||| Sbjct 238488 ACAAAGATCTGCATGATTTAT 238468 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||| |||||||| || || || ||||| || ||||| |||| | Sbjct 239124 GATTCCTTCTGAATATTGTAGTCCGACAACGTGCGACCATCCTCCAGCTGTTTGCCGGCA 239065 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| |||||||| || || || || || ||||||||||| ||| |||| | ||| | Sbjct 239064 AAGATAAGACGCTGCTGATCTGGCGGGATTCCTTCTTTGTC-CTGAATTTTAGCTTTCAC 239006 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||||| | | ||| || || | || | ||||| || |||| || || Sbjct 239005 ATTTTCGATCGTGTCAGAGGCCTCTACTTCCAGAGTAATAGTTTTGCCCGTCAATGTCTT 238946 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 238945 AACGAAGATCTGCAT 238931 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| |||||||||||||| || |||||| || || | ||| || |||| Sbjct 241379 GATTCCTTCTGAATGTTGTAGTCCGACAAGGTACGCCCATCTTCCAATTGCTTTCCGGCG 241320 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | || ||||| || || || || || ||||| ||| ||| ||| | Sbjct 241319 AAGATCAATCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTTGCTTTCACG 241260 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| | || ||||| | || | |||||||| |||| ||| ||| Sbjct 241259 TTCTCGATGGTGTCGGATGCTTCAACCTCCAGGGTGATGGTTTTACCGGTCAAAGTCTTT 241200 Query 138601 ACAAAAATCTGCATGGCT 138618 || || || |||||| || Sbjct 241199 ACGAAGATTTGCATGCCT 241182 >seq2 Length=4278185 Score = 86.0 bits (94), Expect = 6e-12 Identities = 187/278 (67%), Gaps = 3/278 (1%) Strand=Plus/Plus Query 153480 ATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATC 153539 || ||||||| ||| |||||| |||||||| | ||| | || | ||| || | Sbjct 516385 ATTGGATAGTAGTTGATATCGATGATTTTGTTCAAGTTATATGCAACAATTTTGGTCACT 516444 Query 153540 GCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCA 153599 | || ||||| | ||||| |||||| | || | | | | ||| || || ||| Sbjct 516445 TCTTTTAGTTTTTTGAAATTGTAGGTCTTATC-TGGGTTCACAAACATG--TTGACAGCA 516501 Query 153600 ATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCG 153659 || || || ||||| || || || | || |||| | | || | || || |||| Sbjct 516502 ATCGATGCAAGATTGCAAACCGCGATTTCATCGGGGCTGGAATATTCTACAATTTCGGTA 516561 Query 153660 CAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCG 153719 || |||||||||||||| || || | ||| ||||||||| ||||||||| || Sbjct 516562 CAAAGGTTGCTGCATTTAATAGTTCCAACATTCTGCTGATTGGATTTGCGATTACAGTGA 516621 Query 153720 TCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTG 153757 ||||| | |||||||| ||| |||||||| || || Sbjct 516622 TCTTTATACAGCATGTAAGGTGTTCCGGTCTCAACCTG 516659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259161887840