Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq223 125 5e-24 seq496 96.9 2e-15 >seq223 Length=3708094 Score = 125 bits (138), Expect = 5e-24 Identities = 159/214 (74%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCT 15024 ||||||||| | ||| || || ||||| |||||||||||| || || | | | | ||| Sbjct 239824 AACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCG--GACAAGGTGCGCCCATCT 239767 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 |||| |||||||||||| | ||||| | ||| ||||| ||||||||| || ||||| Sbjct 239766 TCTAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCT 239707 Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||| ||||| || ||| |||| || || ||| ||| || || ||||| || || Sbjct 239706 TGAATCTTTGC-CTTCACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGT 239648 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || | ||| || |||||||| |||||| Sbjct 239647 CTTACCGGTTAAAGTCTTCACAAAAATCTGCATA 239614 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||| | | | ||| ||||| ||||| || ||||| || |||||||| ||| Sbjct 241640 CCACCTCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAC 241581 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | || || | |||||||| || | || | |||||||||||| ||| Sbjct 241580 AGGGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGA 241521 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTAC 15128 |||||||| ||||| |||||| ||| ||| |||| || || || | || ||| || Sbjct 241520 ATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTGTC-CGATGCTTCAAC 241462 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| |||||||| || || || ||||| || || ||||||||| Sbjct 241461 TTCCAGGGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCATA 241413 Score = 100 bits (110), Expect = 2e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 |||||||||| ||| | || | ||| || || || || || || |||||||| || | Sbjct 241412 CCACCTCGCAGTCTGAGGACAAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCC--G 241355 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | | | ||||| ||||| || || ||| | ||||| | || ||||| || Sbjct 241354 ACAAGGTACGCCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTG 241295 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 | ||||| |||||||| || |||||||| || | || || || ||| ||| Sbjct 241294 GGATTCCCTCCTTGTCCTGGATCTTTGCTTTC-ACGTTCTCGATGGTGTCGGATGCTTCA 241236 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | ||| ||||||||||| |||| ||| ||||| || |||||||| Sbjct 241235 ACCTCCAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 241186 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 |||||||||||| ||||| || || || || ||||| || || || || | ||| Sbjct 239596 AACTAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCA--GACAAGGTGCGACCATCT 239539 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || || |||||||| ||| | || || | |||||||| || || ||||| || || Sbjct 239538 TCCAACTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGGGGGATGCCTTCTTTATCC 239479 Query 15085 CAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||| ||||| || || |||| || || ||| || || || ||||| || || Sbjct 239478 TGAATCTTTGCCTTA-ACGTTTTCAATGGTGTCGGAGGCCTCGACTTCCAAGGTGATTGT 239420 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||| || |||||||| |||||||||||||| Sbjct 239419 TTTACCGGTAAGAGTTTTGACAAAAATTTGCAT 239387 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||| || ||||| ||||| || ||||| || ||||| ||| || || || | ||| Sbjct 240052 AACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCG--GACAAGGTGCGACCATCT 239995 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || || ||||| || || | ||||| | ||||| || ||||||||||| ||||| Sbjct 239994 TCCAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCC 239935 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||||| ||| || |||| || || ||| || || || ||||| ||||| Sbjct 239934 TGGATTTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTC 239875 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || | ||||| ||||||||||||||| Sbjct 239874 TTACCAGTTAACGTTTTCACAAAAATTTGCATA 239842 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||| || || |||||||| || ||||| || || || ||| || || || | ||| Sbjct 240939 AACCAAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCG--GACAAGGTGCGACCATCT 240882 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || || || || || ||| | || || ||||||||||| |||||| || || ||||| Sbjct 240881 TCCAACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTGGAATCCCCTCTTTGTCC 240822 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || || ||| || | || || || ||| ||| || || | ||| |||||| Sbjct 240821 TGGATCTTCGCTTTCACGTTCTCAATGGTGTCGGATGCTTCAACTTCCAGGGTGATGGTT 240762 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| |||| |||||| |||||||| |||||| Sbjct 240761 TTACCGGTCAAAGTTTTGACAAAAATCTGCATA 240729 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || ||||| || |||||||| || || | | | ||||| Sbjct 238911 ACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCC 238852 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 ||||| || || || | |||| | ||| ||||| ||| ||||| |||||||| Sbjct 238851 AATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGG 238792 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || ||| |||| || |||||| | ||| || || | || ||||| || Sbjct 238791 ATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCGACATCGAGAGTGATGGTCTTG 238732 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||| ||||| || || ||||| Sbjct 238731 CCGGTCAAAGTCTTTACGAAGATCTGCAT 238703 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CG 15021 || ||| ||||| | ||| || || || || ||||| || ||| || || || | Sbjct 240283 TAGAACCAAATGCAAGGTGGATTCCTTCTGAATGTTATAGTCG--GACAAGGTGCGACCA 240226 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| || ||||| || ||| | || || | |||||||| || |||||||| || Sbjct 240225 TCTTCCAACTGTTTACCCGCGAAGATTAATCTTTGTTGGTCTGGGGGGATTCCTTCTTTA 240166 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||| || || ||| | || || || || | ||| || || ||||| ||| Sbjct 240165 TCCTGAATCTTCGCCTTCACATTCTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATG 240106 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| || | |||||| ||||||||||||||| Sbjct 240105 GTCTTACCAGTTAAAGTTTTCACAAAAATTTGCATA 240070 >seq496 Length=1672140 Score = 96.9 bits (106), Expect = 2e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 14989 TTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15048 || || || ||||| || |||| | | | ||||||| |||||| ||||| | ||| Sbjct 1564665 TTCTGGATATTGTAGTCAGAGAGAGTACGACCATCTTCTAGTTGTTTACCAGCAAAGATC 1564606 Query 15049 AAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCT 15108 || | ||| || || |||||||||||||||||| || || || ||| |||| Sbjct 1564605 AATCTCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTTTCA 1564546 Query 15109 ATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15168 ||||||||| | || || || | ||| ||||||||||| ||||| || || || || Sbjct 1564545 ATAGTATCGGAAGCCTCCACCTCAAGGGTGATGGTTTTACCCGTCAGGGTCTTCACGAAG 1564486 Query 15169 ATTTGCAT 15176 || ||||| Sbjct 1564485 ATCTGCAT 1564478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357389726316770