Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq223 123 2e-23 >seq223 Length=3708094 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | ||||| || |||||||||||||| ||| || |||||| ||| || Sbjct 240051 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTGCGACCATCTTCC 239992 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | |||||| || || ||||||||| || ||||| || || || || || |||||| | Sbjct 239991 AACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGG 239932 Query 127025 ATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||||| ||| |||| | ||||| |||||| | ||||||||| | ||| | || || Sbjct 239931 ATTTT-TGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCTT 239873 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | ||||| |||||||| ||||| Sbjct 239872 ACCAGTTAACGTTTTCACAAAAATTTGCAT 239843 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 || ||||| | || || || |||||||| ||||||||| || ||||| ||| ||| Sbjct 239823 ACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCGCCCATCTTCT 239764 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || ||||| ||||| | ||||||| |||||| || || || || ||||| ||||| || Sbjct 239763 AGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCT-TG 239705 Query 127025 ATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 | | | ||| || | | ||||| |||||| | |||||||| | ||| | || || Sbjct 239704 AATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTCTT 239645 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| | ||| || |||||||||||||| Sbjct 239644 ACCGGTTAAAGTCTTCACAAAAATCTGCAT 239615 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | ||||| || | ||||| || ||||||||||| || ||| | Sbjct 240956 CCTCCGCGGAGACGGAGAACCAAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCGGAC 240897 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | ||| || || ||| | || |||||||| || || || || Sbjct 240896 AAGGTGCGACCATCTTCCAACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTGGA 240837 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCG-TACTCTCGAC 127065 || ||||| |||||| ||| ||| || | | || | |||||| | | || || || Sbjct 240836 ATCCCCTCTTTGTCCTGGATCTTCGCTTTCACGTTCTCAATGGTGTCGGATGCT-TCAAC 240778 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | ||||| ||||||| |||||| |||||||||||||| Sbjct 240777 TTCCAGGGTGATGGTTTTACCGGTCAAAGTTTTGACAAAAATCTGCAT 240730 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | || | |||||||| | || || ||||| || || ||||| || Sbjct 238930 TCCACCGCGGAGACGGAGGACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGA 238871 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || | || ||||| || |||||| || |||||| || || || Sbjct 238870 AAGGGTGCGGCCATCTTCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGG 238811 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| | ||||| || || | | ||||| Sbjct 238810 GATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCGAC 238751 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 |||| || | || |||||||||| ||| ||||| || ||||||||| || Sbjct 238750 ATCGAGAGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATCTGCATGCCT 238699 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | ||| | ||||| || | ||| || || || ||||||||||| || | Sbjct 239157 CCTCCACGAAGTCGAAGAACCAAGTGCAGCGTGGATTCCTTCTGAATATTGTAGTCCGAC 239098 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||||| ||| || |||||||| || || |||| | ||||||||||| || || Sbjct 239097 AACGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATAAGACGCTGCTGATCTGGCGGG 239038 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || |||||| ||| ||| || || | | ||||| ||||| | ||| || Sbjct 239037 ATTCCTTCTTTGTCC-TGAATTTTAGCTTTCACATTTTCGATCGTGTCAGAGGCCTCTAC 238979 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | |||||||| |||| || || || || |||||||| Sbjct 238978 TTCCAGAGTAATAGTTTTGCCCGTCAATGTCTTAACGAAGATCTGCAT 238931 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || ||||| || || ||||| ||| | ||||| ||| || Sbjct 241166 ACCAAGTGAAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 241107 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | || ||||| || |||||| || |||||| || || || || |||||||||||| | Sbjct 241106 AATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGG 241047 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||| | | |||| || || | | || |||||||| | ||| | ||||| Sbjct 241046 ATCTTAGCCTTCACATTCTCGATAGTATCAGATGCT-TCGACTTCCAGGGTGATGGTTTT 240988 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||||||||| || ||||| || ||||| Sbjct 240987 GCCGGTCAGAGTCTTGACAAAGATTTGCAT 240958 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || ||||| ||||| || || || || ||| || | || ||||| Sbjct 241382 GTGGATTCCTTCTGAATGTTGTAGTCCGACAAGGTACGCCCATCTTCCAATTGCTTTCCG 241323 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TT 127035 ||| ||||||||| ||||| || || || || |||||||||||| ||| || ||| || Sbjct 241322 GCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTT-TGCTTT 241264 Query 127036 GAGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAG 127094 | | |||| |||||| | | || || || || | ||| | ||||| ||||||| || Sbjct 241263 CACGTTCTCGATGGTGTCGGATGCT-TCAACCTCCAGGGTGATGGTTTTACCGGTCAAAG 241205 Query 127095 TTTTTACAAAAATCTGCATGGCT 127117 | ||||| || || |||||| || Sbjct 241204 TCTTTACGAAGATTTGCATGCCT 241182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475497697357280