Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq223 143 6e-29 >seq223 Length=3708094 Score = 143 bits (158), Expect = 6e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| ||||| |||||||| ||||| || || ||||| || | ||||||||| | ||| || Sbjct 241407 TCGCAGTCTGAGGACAAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCCGACAAGGT 241348 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||| ||||||||||||||||| | | |||||||| || ||||| Sbjct 241347 ACGCCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCC 241288 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| |||||| |||||| |||| |||||| | || ||| || |||| Sbjct 241287 CTCCTTGTCCTGGATCTTTGCTTTCACGTTCTCGATGGTGTCGGATGCTTCAACCTCCAG 241228 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || | ||| || || || ||||| Sbjct 241227 GGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTG 241189 Score = 138 bits (152), Expect = 3e-27 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| || | ||||| || || || || |||| ||||||||| | || || Sbjct 241635 TCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 241576 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| |||||||| || ||||| |||||||||||||| ||||| || |||||| Sbjct 241575 GCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGAATTCC 241516 Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 |||| |||||||| ||| || ||||| ||| | |||||| | || ||| || |||| Sbjct 241515 TTCTTTGTCCTGAAT-TTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAACTTCCA 241457 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || ||||| || || ||||| Sbjct 241456 GGGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTG 241417 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || ||||| |||| |||||||||| ||| || | |||||||||| ||| Sbjct 239589 TGAAGAGTAGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGT 239530 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || |||||||| || | | || ||||| || || |||||| |||||||||||| Sbjct 239529 TTGCCGGCGAAAATTAATCTTTGTTGGTCTGGGGGGATGCCTTCTTTATCCTGAATCTTT 239470 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| ||| ||| | |||||| | | || || ||||| ||||| || ||||| || Sbjct 239469 GCCTTAACGTTTTCAATGGTGTCGGAGGCCTCGACTTCCAAGGTGATTGTTTTACCGGTA 239410 Query 199607 AGAGTTTTCACAAAAATTTG 199626 |||||||| ||||||||||| Sbjct 239409 AGAGTTTTGACAAAAATTTG 239390 Score = 132 bits (146), Expect = 1e-25 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| || |||||||| | |||||||| | ||| || | |||||| Sbjct 240054 AGAACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTGCGACCATCT 239995 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || ||||| ||||| | | || || || || |||||||||| ||| Sbjct 239994 TCCAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCC 239935 Query 199538 TGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || |||||||| ||| ||||| |||||| | | || || ||||| ||||| || Sbjct 239934 TGGAT-TTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGT 239876 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || | ||||||||||||||||| Sbjct 239875 CTTACCAGTTAACGTTTTCACAAAAATTTG 239846 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || |||||||| | |||||| || | ||| || | |||||||| || || || || Sbjct 239811 GTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCGCCCATCTTCTAGTTGTTTGCCA 239752 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || || || | | ||||||||| || |||||| ||| || ||||||||| |||| Sbjct 239751 GCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCTTGAATCTTTGCCTTC 239692 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||||| |||||| | | ||| || ||||| ||||| |||||||| || | ||| Sbjct 239691 ACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTCTTACCGGTTAAAGTC 239632 Query 199613 TTCACAAAAATTTG 199626 ||||||||||| || Sbjct 239631 TTCACAAAAATCTG 239618 Score = 125 bits (138), Expect = 2e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || ||||| || | ||| ||||| | ||| || | |||||||||| ||| || || Sbjct 240267 GTGGATTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTACCC 240208 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | | || ||||| || ||||||||| ||||||||||| |||| Sbjct 240207 GCGAAGATTAATCTTTGTTGGTCTGGGGGGATTCCTTCTTTATCCTGAATCTTCGCCTTC 240148 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || || | |||||| | | ||| || ||||| ||||| |||||||| || | |||| Sbjct 240147 ACATTCTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATGGTCTTACCAGTTAAAGTT 240088 Query 199613 TTCACAAAAATTTG 199626 |||||||||||||| Sbjct 240087 TTCACAAAAATTTG 240074 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||| || || | ||| || || || |||||||||| ||||||||| | | || Sbjct 238695 CGAAGTCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAAAGGGTG 238636 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||||| || ||||| || || || | | |||||| |||||| ||||| Sbjct 238635 CGGCCGTCTTCCAATTGTTTTCCTGCAAAAATCAACCTCTGCTGATCCGGAGGGATTCCC 238576 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| |||||| ||| ||| || | |||||| | | || || || | Sbjct 238575 TCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCAACCTCGAGG 238516 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || |||||||| ||||||||||| || || Sbjct 238515 GTGATCGTTTTCCCCGTGAGGGTTTTCACAAAGATCTG 238478 Score = 113 bits (124), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || | ||| || || || ||||| || | |||||||| | ||| || Sbjct 239151 CGAAGTCGAAGAACCAAGTGCAGCGTGGATTCCTTCTGAATATTGTAGTCCGACAACGTG 239092 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||||||| || ||||| ||||| ||||||||||| || || |||||| Sbjct 239091 CGACCATCCTCCAGCTGTTTGCCGGCAAAGATAAGACGCTGCTGATCTGGCGGGATTCCT 239032 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| |||||||| ||| || ||||| ||||| ||||| | | ||||| |||| Sbjct 239031 TCTTTGTCCTGAAT-TTTAGCTTTCACATTTTCGATCGTGTCAGAGGCCTCTACTTCCAG 238973 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||| | || || || || || || Sbjct 238972 AGTAATAGTTTTGCCCGTCAATGTCTTAACGAAGATCTG 238934 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || ||||| || || |||| ||||||||| | | || | |||||| Sbjct 241169 AGAACCAAGTGAAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 241110 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||||||||| ||||| || | ||||||||| || ||||| || ||| Sbjct 241109 TCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCC 241050 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| || || | || ||| || |||| ||||| || Sbjct 241049 TGGATCTTAGCCTTCACATTCTCGATAGTATCAGATGCTTCGACTTCCAGGGTGATGGTT 240990 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || ||||| ||||| Sbjct 240989 TTGCCGGTCAGAGTCTTGACAAAGATTTG 240961 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || || || || || || |||| ||||||||| | | || | |||||| Sbjct 238914 AGGACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCT 238855 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||||||||| ||||| || | ||||||||| || ||||| || ||| Sbjct 238854 TCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCC 238795 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || ||||| || || | | ||| ||||| | ||||| ||| Sbjct 238794 TGGATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCGACATCGAGAGTGATGGTC 238735 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || || || || || Sbjct 238734 TTGCCGGTCAAAGTCTTTACGAAGATCTG 238706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178913715224974