Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq223 111 2e-19 seq496 95.1 1e-14 >seq223 Length=3708094 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| ||||| |||||||| | ||||| | || || | |||||| |||||||| Sbjct 240920 TCCTTTTGAATATTATAGTCGGACAAGGTGCGACCATCTTCCAACTGCTTACCGGCGAAA 240861 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || || ||||| ||||| | || | | ||| |||||| ||||||| || | || Sbjct 240860 ATTAATCGCTGTTGGTCTGGTGGAATCCCCTCTTTGTCCTGGATCTTCGCTTTCACGTTC 240801 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | ||| || |||| ||||||||||| || |||| ||||| ||| Sbjct 240800 TCAATGGTGTCGGATGCTTCAACTTCCAGGGTGATGGTTTTACCGGTCAAAGTTTTGACA 240741 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 240740 AAAATCTGCAT 240730 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| ||||||||||| || ||||| | || || | ||||| ||||| || Sbjct 241148 TCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCAATTGCTTTCCGGCAAAG 241089 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | ||||||||| | || | | |||||||||| |||||| ||| | || Sbjct 241088 ATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATTC 241029 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || | ||| || |||| |||||||||||||| ||||| || || ||| Sbjct 241028 TCGATAGTATCAGATGCTTCGACTTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTGACA 240969 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 240968 AAGATTTGCAT 240958 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||| || || ||||| |||| || | || || || || || Sbjct 238665 TCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCTTCCAATTGTTTTCCTGCAAAA 238606 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | |||||| || | || | | ||| |||||| |||||| ||||| || Sbjct 238605 ATCAACCTCTGCTGATCCGGAGGGATTCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTC 238546 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | || || || | ||||| ||||| ||||| || ||||| ||| Sbjct 238545 TCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATCGTTTTCCCCGTGAGGGTTTTCACA 238486 Query 46583 AAGATTTGCAT 46593 ||||| ||||| Sbjct 238485 AAGATCTGCAT 238475 Score = 102 bits (112), Expect = 9e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| ||||| || || |||||||| || | || ||| | || || Sbjct 241394 ACAAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCCGACAAGGTACGCCCATCTTCC 241335 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | ||||| |||||||| ||||| | |||||||| | || | | |||||||||| | Sbjct 241334 AATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGG 241275 Query 46505 ATCTTCTTCTTGAGCGT-CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| | ||| ||| | | | |||||| | ||| || |||| ||||||||||| Sbjct 241274 ATCTT-TGCTTTCACGTTCTCGATGGTGTCGGATGCTTCAACCTCCAGGGTGATGGTTTT 241216 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || || ||||||||||| Sbjct 241215 ACCGGTCAAAGTCTTTACGAAGATTTGCAT 241186 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| |||||||||||||| || | ||||| | || || | ||| ||||||||||| Sbjct 239577 TCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCATCTTCCAACTGTTTGCCGGCGAAA 239518 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || || | || ||||| | || | || || || ||| ||||| ||| | | Sbjct 239517 ATTAATCTTTGTTGGTCTGGGGGGATGCCTTCTTTATCCTGAATCTTTGCCTTAACGTTT 239458 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | || || |||| ||||| ||||| || || || ||||| ||| Sbjct 239457 TCAATGGTGTCGGAGGCCTCGACTTCCAAGGTGATTGTTTTACCGGTAAGAGTTTTGACA 239398 Query 46583 AAGATTTGCATT 46594 || ||||||||| Sbjct 239397 AAAATTTGCATT 239386 >seq496 Length=1672140 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| |||||||||||||| || ||||| || | || || || || || || || || | Sbjct 1564667 CCTTCTGGATATTGTAGTCAGAGAGAGTACGACCATCTTCTAGTTGTTTACCAGCAAAGA 1564608 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 |||| | |||||| || | || | | ||||||||| |||||| ||||| | Sbjct 1564607 TCAATCTCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTTT 1564548 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | || ||| | ||||| || | ||||||||||| |||||||| || || || | Sbjct 1564547 CAATAGTATCGGAAGCCTCCACCTCAAGGGTGATGGTTTTACCCGTCAGGGTCTTCACGA 1564488 Query 46584 AGATTTGCAT 46593 |||| ||||| Sbjct 1564487 AGATCTGCAT 1564478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565234711819440