Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq246 122 1e-22 >seq246 Length=2929822 Score = 122 bits (134), Expect = 1e-22 Identities = 180/250 (72%), Gaps = 10/250 (4%) Strand=Plus/Minus Query 153759 GGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTT 153818 |||| || ||||| ||||| | || | ||||||||||| || ||||| | ||| ||| Sbjct 2693485 GGTACTAGTCAAAGATTTGGGGTACCGCTAGGATATGGAGGACCACATGCAGGATTTTTT 2693426 Query 153819 GCAA--CAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAG 153876 || | || | |||||| || | || || ||||| | ||| |||| || Sbjct 2693425 GCTTGTCGTCAAAGCTTGATAAGACTAA--TGCCAGGAAGAATGATCGGT--GTCACAAG 2693370 Query 153877 ATAGTG---AAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCA 153933 | | || | ||| |||| || ||||||||||| || ||||| ||||| || ||||| | Sbjct 2693369 AGA-TGCCCATGGTCATAACGCCTACAGATTAGCTCTGCAGACCAGAGAACAACATATTA 2693311 Query 153934 GGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTG 153993 | ||||||||||| || |||||||| ||||||||||| ||| | |||| || ||||| | Sbjct 2693310 GAAGAGACAAAGCTACAAGTAACATTTGCACAGCTCAAGCATTATTGGCCAACATGTCCG 2693251 Query 153994 GATTCTATGC 154003 | | ||||| Sbjct 2693250 CAATGTATGC 2693241 Score = 111 bits (122), Expect = 2e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 154866 TCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAG 154925 || ||| | ||||| || || |||||||| |||| || |||||| | ||| | Sbjct 2692175 TCTTGTCTAATGATAACTTATCCATCTACCAATGGAGTTTTTGAAGAAACTATTGCCGAC 2692116 Query 154926 ATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAAT 154985 | || || || || || | | || |||||||| ||||| |||||||| ||| | || Sbjct 2692115 GTTTGCAAAATGGTACACGCCGGGGGGGGTCAGGTTTATCTCGATGGAGCCAATATGAAC 2692056 Query 154986 GCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTA 155045 || ||||| ||||| | ||| |||| ||||| || |||| || | |||||| Sbjct 2692055 GCGCAGGTTGGACTCTGCAGACCTGGTGATTATGGAAGCGACGTATCCCACTTGAACTTA 2691996 Query 155046 CATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 ||||| || || |||||||| || || || ||||| ||||| ||||| || || || || Sbjct 2691995 CATAAGACTTTTTGTATTCCTCACGGTGGCGGAGGGCCTGGTGTAGGACCAATTGGAGT 2691937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579209020636480