Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq246 122 1e-22 >seq246 Length=2929822 Score = 122 bits (134), Expect = 1e-22 Identities = 181/252 (72%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 158418 ATTTGACAT-TGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTC 158476 ||| ||||| ||| | |||| || ||||| ||||| | || | ||||| ||||| | Sbjct 2693501 ATTCGACATATGCA-TCGGTACTAGTCAAAGATTTGGGGTACCGCTAGGATATGGAGGAC 2693443 Query 158477 CTCATGCTGCATTCTTTGCAA--CAACAGACAAGTATAAGAGAAAGATACCTGGCAGAAT 158534 | ||||| | ||| ||||| | || | |||||| || | || || ||||| Sbjct 2693442 CACATGCAGGATTTTTTGCTTGTCGTCAAAGCTTGATAAGACTAA--TGCCAGGAAGAAT 2693385 Query 158535 TGTAGGTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAG 158594 | ||| || |||| | | ||| |||| || ||||||||||| || ||||| || Sbjct 2693384 GATCGGTGTCACAAGAGATGCCCATGGTCATAACGCCTACAGATTAGCTCTGCAGACCAG 2693325 Query 158595 AGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCT 158654 ||| || ||||| |||||||||||||| || |||||||| |||||||| |||||| | | Sbjct 2693324 AGAACAACATATTAGAAGAGACAAAGCTACAAGTAACATTTGCACAGCTCAAGCATTATT 2693265 Query 158655 GGCTAATATGTC 158666 ||| || ||||| Sbjct 2693264 GGCCAACATGTC 2693253 Score = 116 bits (128), Expect = 4e-21 Identities = 272/402 (68%), Gaps = 14/402 (3%) Strand=Plus/Minus Query 159385 AGAAATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATG 159444 ||| | || ||| | ||||| | || || || || || |||||||| || ||| ||| Sbjct 2692331 AGACAAGTTTGTCTCATACCCGTTTCTGCTCACGGCACCAATCCTGCTTCCGCACAAATG 2692272 Query 159445 GCAGGGATGAAAGTTGTAGGTGT-CAAGTGTGATGATGATGGCAACATAGACATCAAAGA 159503 ||||| ||| |||||| | | | | |||| || | |||||| | || | | Sbjct 2692271 GCAGGAATGCAAGTTGAACCTATTCTAGTGCGAA-AGGATGGCTCTGTTGATGT----GG 2692217 Query 159504 TCTAG--AGAAGAAAGCAATCATGAATA-CATTTGAACTG-TCATGTATTATGATTACAT 159559 || | | |||||| | | || ||| ||| || | || ||| | ||||| || | Sbjct 2692216 TCCACTTACAAGAAATGATTGATAAATTTCATGATAATTTATCTTGTCTAATGATAACTT 2692157 Query 159560 ATCCATCTACACATGGTGTATTTGAAACAAACAT--CAGACAGATATGTAAGATTGTTCA 159617 |||||||||| |||| || |||||| || || | ||| | || || || || || Sbjct 2692156 ATCCATCTACCAATGGAGTTTTTGAAGAAACTATTGCCGACG--TTTGCAAAATGGTACA 2692099 Query 159618 TGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGC 159677 | || |||||||| ||||| ||||| || ||| | || || ||||| || || Sbjct 2692098 CGCCGGGGGGGGTCAGGTTTATCTCGATGGAGCCAATATGAACGCGCAGGTTGGACTCTG 2692039 Query 159678 AAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTAT 159737 | ||| |||| ||||| || |||| || | |||||||||||||| || ||||| Sbjct 2692038 CAGACCTGGTGATTATGGAAGCGACGTATCCCACTTGAACTTACATAAGACTTTTTGTAT 2691979 Query 159738 TCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||| || || || ||||| ||||| ||||| || ||||| || Sbjct 2691978 TCCTCACGGTGGCGGAGGGCCTGGTGTAGGACCAATTGGAGT 2691937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588047362965920