Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq223 158 3e-33 >seq223 Length=3708094 Score = 158 bits (174), Expect = 3e-33 Identities = 163/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | ||||||||| || || |||||||||||||| |||| |||| || | ||||||| Sbjct 240052 AACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAG-GTGCGACCATCTT 239994 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | | ||| ||||| || ||||| | || |||||| ||||| ||||| ||||||||||| | Sbjct 239993 CCAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCT 239934 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | |||||| |||||||| || |||||||| || || ||||| | ||| | |||| Sbjct 239933 GGATTTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCT 239874 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || ||||| || || | |||||| Sbjct 239873 TACCAGTTAACGTTTTCACAAAAATTTGCAT 239843 Score = 152 bits (168), Expect = 1e-31 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | ||| ||||| || || ||||| || ||||| |||| |||| || | ||||| | Sbjct 239368 AACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAG-GTACGGCCATCCT 239310 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | | || ||||| || |||||||| || ||||| ||||| || || ||||||||||| | Sbjct 239309 CCAATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCTTTGTCCT 239250 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 ||||||| |||||| || ||||| || || || ||| ||||| | ||||| |||| Sbjct 239249 GAATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGACTTCCAAGGTAATTGTCT 239190 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| ||||| || |||||||| | |||||| Sbjct 239189 TTCCGGTCAAGGTCTTTACGAATATTTGCAT 239159 Score = 152 bits (168), Expect = 1e-31 Identities = 162/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTT 194989 ||| | ||| || || || || ||||||||||| || |||| |||| || | ||||||| Sbjct 240939 AACCAAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCGGACAAG-GTGCGACCATCTT 240881 Query 194990 CGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTT 195049 | | ||||||||| ||||| || | ||| ||||||||||| ||||| || |||||||| | Sbjct 240880 CCAACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTGGAATCCCCTCTTTGTCCT 240821 Query 195050 GAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 | || || || ||||||||||||||||| || ||| ||||| ||||| | || | Sbjct 240820 GGATCTTCGCTTTCACGTTCTCAATGGTGTCGGATGCTTCAACTTCCAGGGTGATGGTTT 240761 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || ||||||||||| || || | ||||| Sbjct 240760 TACCGGTCAAAGTTTTGACAAAAATCTGCAT 240730 Score = 147 bits (162), Expect = 5e-30 Identities = 153/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||||| || || ||||| || || |||| |||| || | |||||||| | ||| ||||| Sbjct 240267 GTGGATTCCTTCTGAATGTTATAGTCGGACAAG-GTGCGACCATCTTCCAACTGTTTACC 240209 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| | || |||||||||||| || || |||||||| || ||||| || ||| Sbjct 240208 CGCGAAGATTAATCTTTGTTGGTCTGGGGGGATTCCTTCTTTATCCTGAATCTTCGCCTT 240149 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || |||||||||||||| ||| ||| ||||| | ||| | ||||| || || ||||| Sbjct 240148 CACATTCTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATGGTCTTACCAGTTAAAGT 240089 Query 195123 TTTTACGAACACTTGCAT 195140 ||| || || | |||||| Sbjct 240088 TTTCACAAAAATTTGCAT 240071 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||| | || ||| | || || || || ||||| || || ||||| |||| || || Sbjct 241635 TCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 241576 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| || ||||| || || || ||||| || || ||||||||||| ||||| || Sbjct 241575 GCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGAATTCC 241516 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| |||||||| || || || |||||||||||||| ||| ||||| || Sbjct 241515 TTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAACTTCCAG 241456 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | || || || || | ||||| ||||| | |||||| Sbjct 241455 GGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 Score = 138 bits (152), Expect = 3e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||||| || || || || |||||||| || | |||| || | |||||||| | ||| Sbjct 239589 TGAAGAGTAGATTCCTTCTGGATATTGTAGTCAGACAAG-GTGCGACCATCTTCCAACTG 239531 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||| || | || |||||||||||| || ||||||||||| || ||||| || Sbjct 239530 TTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGGGGGATGCCTTCTTTATCCTGAATCTT 239471 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||| ||||| ||||||||||| || || ||||| | ||| | || || || || Sbjct 239470 TGCCTTAACGTTTTCAATGGTGTCGGAGGCCTCGACTTCCAAGGTGATTGTTTTACCGGT 239411 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | |||||| || || | ||||||| Sbjct 239410 AAGAGTTTTGACAAAAATTTGCATT 239386 Score = 134 bits (148), Expect = 3e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||||| || |||||||| |||||||||| |||| || | ||||||||| || || || || Sbjct 239811 GTGGATTCCTTTTGAATGTTGTAATCGGACAAG-GTGCGCCCATCTTCTAGTTGTTTGCC 239753 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || || || | || || |||||||| ||||| || |||||||||||||| ||| ||| Sbjct 239752 AGCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCTTGAATCTTTGCCTT 239693 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || || || |||||||| || ||| ||||| | ||| | ||||| || || ||||| Sbjct 239692 CACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTCTTACCGGTTAAAGT 239633 Query 195123 TTTTACGAACACTTGCAT 195140 || || || | ||||| Sbjct 239632 CTTCACAAAAATCTGCAT 239615 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | ||| | ||| || ||||| || || ||||||||||| || | | || | Sbjct 239148 AGTCGAAGAACCAAGTGCAGCGTGGATTCCTTCTGAATATTGTAGTCCGACAACGTGCGA 239089 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || ||||| || || || |||||||| || || || ||||| || || |||||| Sbjct 239088 CCATCCTCCAGCTGTTTGCCGGCAAAGATAAGACGCTGCTGATCTGGCGGGATTCCTTCT 239029 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| |||||||| || || || || || ||||| || || ||||| || ||| Sbjct 239028 TTGTCCTGAATTTTAGCTTTCACATTTTCGATCGTGTCAGAGGCCTCTACTTCCAGAGTA 238969 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | || || || ||||| || || ||||| | |||||| Sbjct 238968 ATAGTTTTGCCCGTCAATGTCTTAACGAAGATCTGCATT 238930 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | || | |||||| ||||| || ||||| || ||||| || | ||| || | Sbjct 238692 AGTCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGG 238633 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| | || || ||||| || || | | || || || ||||| || || ||| Sbjct 238632 CCGTCTTCCAATTGTTTTCCTGCAAAAATCAACCTCTGCTGATCCGGAGGGATTCCCTCT 238573 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || ||| ||||||||||||||||||||| ||| || || || ||||| Sbjct 238572 TTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTG 238513 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||| || || || | ||||| || || | ||||| Sbjct 238512 ATCGTTTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 238475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109474179648374