Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq223 129 4e-25 seq496 82.4 5e-11 >seq223 Length=3708094 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| ||| ||||||||| ||||| |||||||||||| | || |||| ||| Sbjct 238911 ACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCC 238852 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | || ||||||||||| || |||| ||||||||| | || | ||||||||||| Sbjct 238851 AATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGG 238792 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | | |||| || || || ||||||| || ||||| || Sbjct 238791 ATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCGACATCGAGAGTGATGGTCTTG 238732 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | |||||| || ||||||||||| Sbjct 238731 CCGGTCAAAGTCTTTACGAAGATCTGCAT 238703 Score = 122 bits (134), Expect = 6e-23 Identities = 156/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || ||||||||| ||||| ||||| || ||| | || |||| || Sbjct 241167 AACCAAGTGAAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTC 241108 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || ||||||||||| || |||| ||||||||| | || | ||||||||||| Sbjct 241107 CAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTG 241048 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| || || || || || | ||| || || || || | ||| |||||| Sbjct 241047 GATCTTAGCCTTCAC--ATTCTCGATAGTATCAGATGCTTCGACTTCCAGGGTGATGGTT 240990 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || |||||||| |||||||| |||||| Sbjct 240989 TTGCCGGTCAGAGTCTTGACAAAGATTTGCATA 240957 Score = 118 bits (130), Expect = 7e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| ||| |||||||| || |||||||| | | || |||| || Sbjct 239140 AACCAAGTGCAGCGTGGATTCCTTCTGAATATTGTAGTCCGACAACGTGCGACCATCCTC 239081 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||||||| |||||||| || || || ||||| ||| |||| | || || ||||| Sbjct 239080 CAGCTGTTTGCCGGCAAAGATAAGACGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTG 239021 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || ||| || | | |||| ||| |||||| || || | || || ||||| Sbjct 239020 AATTTTAGCTTTCACATTTTCGATCGTGTCAGAGGCCTCTACTTCCAGAGTAATAGTTTT 238961 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | ||||| || ||||||||||| Sbjct 238960 GCCCGTCAATGTCTTAACGAAGATCTGCAT 238931 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| ||| || || ||||| |||||||||||| | || | || ||| Sbjct 238683 ACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCTTCC 238624 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | |||||||| ||||| || | | ||||| || | || | ||||| ||||| Sbjct 238623 AATTGTTTTCCTGCAAAAATCAACCTCTGCTGATCCGGAGGGATTCCCTCTTTGTCCTGG 238564 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || |||||||| |||| ||| || ||||| Sbjct 238563 ATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATCGTTTTC 238504 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||| || ||||||||||||||||| Sbjct 238503 CCCGTGAGGGTTTTCACAAAGATCTGCAT 238475 Score = 107 bits (118), Expect = 1e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 || || |||||| || | || ||||||||| ||||| ||||| || ||| | || | Sbjct 241629 CCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGACC 241570 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 ||| ||||||||||| |||||||| || || || || |||||| |||| | || || || Sbjct 241569 ATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGAATTCCTTCTTT 241510 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTAT 34945 ||| ||| || ||| || | | || | || || ||||| || | ||| || Sbjct 241509 GTCCTGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAACTTCCAGGGTGAT 241450 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||||| || || || || || || ||||| |||||| Sbjct 241449 GGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCATA 241413 Score = 105 bits (116), Expect = 4e-18 Identities = 149/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 34775 CAAG-TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCA 34833 |||| || | |||| ||| ||||||||||| |||||||| | | | || |||| |||| Sbjct 241393 CAAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCCGACAAGGTACGCCCATCTTCCA 241334 Query 34834 GCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAA 34893 || |||||||| || || | || |||||||||| | || | ||||||||||| | Sbjct 241333 ATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGA 241274 Query 34894 TCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTC 34953 |||| ||| ||| | || | || || ||||| || | ||| |||||||| | Sbjct 241273 TCTTTGCTTTCACGTTCTCGATGGTGTCGGATGCTTCAACCTCCAGGGTGATGGTTTTAC 241214 Query 34954 CCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | |||||| || ||||| ||||| Sbjct 241213 CGGTCAAAGTCTTTACGAAGATTTGCAT 241186 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| || | ||| ||| ||||||||||||||||| || | | | || |||| || Sbjct 240280 AACCAAATGCAAGGTGGATTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCTTC 240221 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || |||||| || || || |||| || ||| |||||| | || | || || || || Sbjct 240220 CAACTGTTTACCCGCGAAGATTAATCTTTGTTGGTCTGGGGGGATTCCTTCTTTATCCTG 240161 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||||| || || || || || | ||| || || || || | ||| ||||| Sbjct 240160 AATCTTCGCCTTCAC--ATTCTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATGGTC 240103 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | ||| |||||||| || |||||| Sbjct 240102 TTACCAGTTAAAGTTTTCACAAAAATTTGCATA 240070 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || ||| || ||||| || ||||| || | | | || |||| || Sbjct 240052 AACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTGCGACCATCTTC 239993 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || |||||| |||||||| || | || ||| || ||| | || | || || ||||| Sbjct 239992 CAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTG 239933 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 || || ||||||| | | || | || |||||| || || | ||| ||||| || Sbjct 239932 GATTTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCTT 239873 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | || |||||||| || |||||| Sbjct 239872 ACCAGTTAACGTTTTCACAAAAATTTGCATA 239842 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| || || | ||| ||| || |||||||| || || || | | | || |||| || Sbjct 239824 AACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCGCCCATCTTC 239765 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||||| || ||||| || | || ||||||||| | || | ||||| ||||| Sbjct 239764 TAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCTTG 239705 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| || || | | || | || ||| || || || | ||| || || || Sbjct 239704 AATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTCTT 239645 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | |||||||||||| ||||||||| Sbjct 239644 ACCGGTTAAAGTCTTCACAAAAATCTGCATA 239614 >seq496 Length=1672140 Score = 82.4 bits (90), Expect = 5e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||| || || ||||| || || | || |||| || || ||||| || ||||| || Sbjct 1564665 TTCTGGATATTGTAGTCAGAGAGAGTACGACCATCTTCTAGTTGTTTACCAGCAAAGATC 1564606 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 | || ||||| || | || | || |||||||| ||||| ||||| | | Sbjct 1564605 AATCTCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTTTCA 1564546 Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973 || | || ||||| || || | ||| |||||||| ||||| || |||||||| ||| Sbjct 1564545 ATAGTATCGGAAGCCTCCACCTCAAGGGTGATGGTTTTACCCGTCAGGGTCTTCACGAAG 1564486 Query 34974 ATCTGCAT 34981 |||||||| Sbjct 1564485 ATCTGCAT 1564478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324631534721616