Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 132 5e-26 seq142 96.9 4e-15 >seq2 Length=4278185 Score = 132 bits (146), Expect = 5e-26 Identities = 214/306 (70%), Gaps = 4/306 (1%) Strand=Plus/Plus Query 48277 TATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTG 48336 |||| ||||||| || | || || | | ||| |||||||| |||||||||||||| | Sbjct 517114 TATTTTTTTTAAGGTCCAAGAACTCGAAAACATCTGCATGCCAGGGTTCTAAATATATGG 517173 Query 48337 CCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAA 48396 | | |||| || |||||||| || || || || | ||||| || ||||| || || | Sbjct 517174 CAAAAGCACCGGGCCGTTTATTGCCACCCTGGTCAACGTATCTTGCTGTATTATTGTATA 517233 Query 48397 CTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCAC 48456 | | || ||| || || | ||| | || || || ||||| | || ||| | || Sbjct 517234 CACGTAGCATGGGCACCAGGCCACTAGAATCTCCGTTAGTTCCAGCTATGTAAGTACCTT 517293 Query 48457 TAGCTCTTAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514 | ||||| || | | | ||| || || | || || || |||| ||| || || Sbjct 517294 TGGCTCTGATGCAATGCACATTCAA--GCCGACTCCTCCAGCAGATTTACTTATAAGTGC 517351 Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAA 48574 |||| |||| || ||||| ||||||||||| ||||| || || ||||| ||||||| || Sbjct 517352 ACACTGTTTCAGCGTATCGTAAATTCCTTCGATACTGTCCTCCTTCATAGTTAATAGGAA 517411 Query 48575 ACAACT 48580 ||| || Sbjct 517412 ACAGCT 517417 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 48918 CTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATA 48977 ||||| | ||||||||| || || || |||||||||| || ||| || ||||||| ||| Sbjct 517944 CTAAACAATTTTTTTGTCTCCTTGTGGAGATTAGATACAGCTATCCTTGCAGCTAGAATA 518003 Query 48978 GCATAATCTGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTAAT 49037 |||||||| | ||| ||||||| ||| || ||||||| ||||| |||| || Sbjct 518004 GCATAATCGGCATGTTTTGTTGTCATTGTGGCAGCAGTTTCTGCAGCTAAATTATCCAAC 518063 Query 49038 TC 49039 || Sbjct 518064 TC 518065 >seq142 Length=137952 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 |||||||| || | |||||| || |||| |||||||| ||||| | ||| || Sbjct 57450 TCGTCTCTGGAAATGAGTTCATTGCTGAAAGTTAGCCCAGGCATAAGTCCGCGTTTCTTC 57391 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||| | |||||| || || || || ||||||||||||||||| || Sbjct 57390 AGCCAGAATATGGCAGCAAAACTACCGCTGAAAAAGATTCCTTCTACTGCTGCAAAGGCC 57331 Query 19105 ACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCC 19164 || | || |||||| || | ||| || || || ||||| || | |||||| | ||| Sbjct 57330 ACGACTCGCTCTCCAAAATTTGCACTATCATGATTGATCCAATTTATTGCCCAGTTAGCT 57271 Query 19165 TTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 || ||| ||||| || | |||| || | ||| || Sbjct 57270 TTTTTTGCGACACAAGGTAGGTTCTCGATGGCATTGAA 57233 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTC 19509 || || | ||| ||||||||||| |||||||||||||| |||||||| || ||||| ||| Sbjct 56793 TTTGAGAGATCCACTTCTTCAACAGTCCAAAAAGAAGCTTCTGCTTTCTTGTACATTTTC 56734 Query 19510 CATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATA 19569 || || || | |||| || || || ||||| || | || ||||||| | || | Sbjct 56733 CAAATGTCTGGCCATTGGATTGGGAAAATAACGAAGCGTCTTGGATTTTCTCTCAGCAAT 56674 Query 19570 GGTTC 19574 ||||| Sbjct 56673 GGTTC 56669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562105132240080