Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq223 150 1e-31 >seq223 Length=3708094 Score = 150 bits (166), Expect = 1e-31 Identities = 178/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | || ||| | ||| || || || |||||||| ||||| || ||||| |||| Sbjct 239387 TTCCACCACGTAGACGAAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGG 239328 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | | |||| |||||||| ||||| ||||| || | |||||||||||| || | Sbjct 239327 ACAAGGTACGGCCATCCTCCAATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTG 239268 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || |||||||| || |||||||| || ||| |||| | ||| || || | ||| | Sbjct 239267 GGATTCCTTCTTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGA 239208 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAA 101480 |||| | || | || || ||||| || || ||||| ||||| |||||| | | |||| Sbjct 239207 CTTCCAAGGTAATTGTCTTTCCGGTCAAGGTCTTTACGAATATTTGCATGCCTCCACGAA 239148 Query 101481 G 101481 | Sbjct 239147 G 239147 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| || || ||||||||||| ||||| ||||| || |||| Sbjct 240956 CCTCCGCGGAGACGGAGAACCAAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCGGAC 240897 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||| |||||||| || || || || |||||||| || || ||| Sbjct 240896 AAGGTGCGACCATCTTCCAACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTGGA 240837 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || ||||| || || || || ||| || | || | ||||| || | ||| ||| Sbjct 240836 ATCCCCTCTTTGTCCTGGATCTTCGCTTTCACGTTCTCAATGGTGTCGGATGCTTCAACT 240777 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || |||| ||||| ||||| |||||||| ||||| |||||||| Sbjct 240776 TCCAGGGTGATGGTTTTACCGGTCAAAGTTTTGACAAAAATCTGCAT 240730 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||||||||| | ||| ||||| ||||| || |||||||||| | || | | Sbjct 239830 ACGGAGAACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCGCCC 239771 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | ||| || || ||||| ||||| | ||| || || || ||||| || ||||| Sbjct 239770 ATCTTCTAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTT 239711 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||| ||| || ||| |||| | ||||| || | ||| ||||| | |||| Sbjct 239710 GTCTTGAATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGAT 239651 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || ||||||||||| || ||||| |||||||| Sbjct 239650 AGTCTTACCGGTTAAAGTCTTCACAAAAATCTGCAT 239615 Score = 136 bits (150), Expect = 3e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| || |||||||| |||||||| || || ||||| |||| | Sbjct 241184 CCTCCACGGAGACGAAGAACCAAGTGAAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAG 241125 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| ||||||||||| || ||||| |||| | ||| || || || || Sbjct 241124 AGGGTGCGGCCATCTTCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGG 241065 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || || || || || ||| | || | ||| ||||| | ||| ||| Sbjct 241064 ATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCGATAGTATCAGATGCTTCGACT 241005 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 || || |||| ||||||||||| | ||| || ||||| || ||||| | |||| ||| Sbjct 241004 TCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTGACAAAGATTTGCATACCTCCGCGGAGA 240945 Score = 132 bits (146), Expect = 4e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||||||||| |||||||| || || ||||| || | | || | | |||| ||| Sbjct 238911 ACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCC 238852 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || ||||| |||| | ||| || || || || || || || || || || Sbjct 238851 AATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGG 238792 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| |||| | || || || | ||| || || ||||||| || ||| Sbjct 238791 ATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCGACATCGAGAGTGATGGTCTTG 238732 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481 ||||| ||||| ||||| || ||||||||| | ||||||| Sbjct 238731 CCGGTCAAAGTCTTTACGAAGATCTGCATGCCTCCGCGAAG 238691 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | |||||||||||| |||||||| || || |||||||| || | Sbjct 239613 CCTCCACGCAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCAGAC 239554 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||| || || || || || || || | ||||| || || || Sbjct 239553 AAGGTGCGACCATCTTCCAACTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGGGGG 239494 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||||||||| ||||| ||| || || |||| | ||||| || | || ||| Sbjct 239493 ATGCCTTCTTTATCCTGAATCTTTGCCTTAACGTTTTCAATGGTGTCGGAGGCCTCGACT 239434 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| ||||| ||||| | |||||| ||||| || ||||| Sbjct 239433 TCCAAGGTGATTGTTTTACCGGTAAGAGTTTTGACAAAAATTTGCAT 239387 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||||| ||| ||||| | ||| ||||| || || || || || |||| Sbjct 240297 CCTCCCCGGAGACGTAGAACCAAATGCAAGGTGGATTCCTTCTGAATGTTATAGTCGGAC 240238 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||| || ||||| || || || || | ||||| || || || Sbjct 240237 AAGGTGCGACCATCTTCCAACTGTTTACCCGCGAAGATTAATCTTTGTTGGTCTGGGGGG 240178 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||||||||| ||||| || || ||| | || | |||||||| | ||| ||| Sbjct 240177 ATTCCTTCTTTATCCTGAATCTTCGCCTTCACATTCTCAATGGTGTCAGAAGCTTCGACT 240118 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || || || ||||||||||| ||||| || ||||| Sbjct 240117 TCCAAGGTGATGGTCTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 240071 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || ||||| || || || ||||| || | | || | |||| |||||||| Sbjct 241389 ATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCCGACAAGGTACGCCCATCTTCCAATTG 241330 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || ||||| | || || || || || || || || || || || || || Sbjct 241329 CTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTT 241270 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | ||| || | || | ||||| || | ||| || || || |||| ||||| ||||| Sbjct 241269 TGCTTTCACGTTCTCGATGGTGTCGGATGCTTCAACCTCCAGGGTGATGGTTTTACCGGT 241210 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 ||||| ||||| || || |||||| Sbjct 241209 CAAAGTCTTTACGAAGATTTGCATG 241185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396275878926354