Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq246 120 4e-22 >seq246 Length=2929822 Score = 120 bits (132), Expect = 4e-22 Identities = 273/402 (68%), Gaps = 14/402 (3%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||| || ||||| ||||| ||||| || || || |||||||| || ||||||||| Sbjct 2691937 ACTCCAATTGGTCCTACACCAGGCCCTCCGCCACCGTGAGGAATACAAAAAGTCTTATGT 2691996 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 || || | || |||| || ||||| |||| ||| | || || ||||| || Sbjct 2691997 AAGTTCAAGTGGGATACGTCGCTTCCATAATCACCAGGTCTGCAGAGTCCAACCTGCGCG 2692056 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | ||| || ||||||||||| |||||||| || | | || || || || || | Sbjct 2692057 TTCATATTGGCTCCATCGAGATAAACCTGACCCCCCCCGGCGTGTACCATTTTGCAAA-- 2692114 Query 138363 TGTCTG--ATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATG 138420 ||| | || || |||||| || |||| || |||||||| || ||||| | ||| | Sbjct 2692115 CGTCGGCAATAGTTTCTTCAAAAACTCCATTGGTAGATGGATAAGTTATCATTAGACAAG 2692174 Query 138421 A-GAGTTCAAATG-TATTCATGATTGCTTTCTTCT--CTAGATCTTTGATGTCTATGTTG 138476 | | || ||| ||| || | | |||||| | | || | | || | | Sbjct 2692175 ATAAATTATCATGAAATTTATCAATCATTTCTTGTAAGTGGACC----ACATCAACAGAG 2692230 Query 138477 CCATCATCATCACACTTG-ACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGG 138535 ||||| | || |||| | | | | |||||| |||||||||||| ||| |||||| Sbjct 2692231 CCATCCT-TTCGCACTAGAATAGGTTCAACTTGCATTCCTGCCATTTGTGCGGAAGCAGG 2692289 Query 138536 ATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCT 138577 ||| || || || || || | ||||| ||||| || | ||| Sbjct 2692290 ATTGGTGCCGTGAGCAGAAACGGGTATGAGACAAACTTGTCT 2692331 Score = 104 bits (114), Expect = 3e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 139284 GCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCT 139343 ||||| | | | ||||| || || | | |||||| |||||||| |||||||| || ||| Sbjct 2693241 GCATACATTGCGGACATGTTGGCCAATAATGCTTGAGCTGTGCAAATGTTACTTGTAGCT 2693300 Query 139344 TTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGC 139393 ||||||||||||||||| || ||||| || || || ||||||||||| || Sbjct 2693301 TTGTCTCTTCTAATATGTTGTTCTCTGGTCTGCAGAGCTAATCTGTAGGC 2693350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578994622035440