Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq190 96.9 5e-15 >seq190 Length=1702693 Score = 96.9 bits (106), Expect = 5e-15 Identities = 156/224 (70%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 47843 CCTCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATA 47902 |||||||||||||| | ||||| |||||||| | | | ||| | |||||| | | Sbjct 967477 CCTCGACATAATCTTTAGCATGCCCCCAGTCTCTTTGAGAATCTAAATTTCCCAACTC-- 967534 Query 47903 AACAGTCTTGCTTACCTTCAGAGATTGCTTTTAAT----GCTCTTGTAATCTTACGAGTT 47958 |||| | ||| | | || | ||||| | ||||||||| || | ||| Sbjct 967535 --CAGTACTTCTTGCAGGCCAAGTTCTATTTTAGCAGCAGATCTTGTAATTTTTCTAGTC 967592 Query 47959 ACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATAC 48018 ||||| |||| || | ||| ||| || ||||| || || ||||| ||||||||||| Sbjct 967593 ACAAAGTTTTCTCCTCTTCTCGGACTCTCGTGATTGAATAGTATACCGTTACAGGCATAC 967652 Query 48019 ATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATA 48062 || ||||||| ||| ||||| || ||||||||| | ||||| Sbjct 967653 ATACCGTATGCTTCTCGATAATTTACCACTATCCAGAAGCCATA 967696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665490057649040