Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq223 140 6e-28 seq496 125 1e-23 >seq223 Length=3708094 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| || | | || || |||| || | |||| || || |||||| Sbjct 240079 AATTTGCATACCCCCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGAATATT 240020 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||||| || || | | ||| || || ||||| |||||||| || ||||| ||||| Sbjct 240019 GTAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTACCGGCAAAGATCAATCTTTGTTG 239960 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || ||||||||||| || || ||||| | ||| | ||| || || ||||| Sbjct 239959 ATCTGGGGGAATTCCTTCTTTGTCCTGGATTTTTGCTTTGACGTTTTCGATGGTGTCGGA 239900 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||| ||||| | || || || ||||| |||| |||||| ||||| |||||||| Sbjct 239899 GGCCTCGACTTCCAAGGTGATGGTCTTACCAGTTAACGTTTTCACAAAAATTTGCAT 239843 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || | || || || || | ||| | |||| || || ||||| ||||| Sbjct 239616 ATACCTCCACGCAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCA 239557 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | | ||| || || ||||| ||||| ||||||||||| ||||| || || Sbjct 239556 GACAAGGTGCGACCATCTTCCAACTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGG 239497 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||||||||| || || || | || | ||| ||| || ||||| | ||| Sbjct 239496 GGGATGCCTTCTTTATCCTGAATCTTTGCCTTAACGTTTTCAATGGTGTCGGAGGCCTCG 239437 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| | || || |||||||| || || ||||| ||||| ||||||||| Sbjct 239436 ACTTCCAAGGTGATTGTTTTACCGGTAAGAGTTTTGACAAAAATTTGCATT 239386 Score = 127 bits (140), Expect = 4e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| |||||| || | || || ||| ||||||||||| || || | | | Sbjct 240285 CGTAGAACCAAATGCAAGGTGGATTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCA 240226 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || || ||||| || || || |||||||| ||||| || || || |||||||||||| Sbjct 240225 TCTTCCAACTGTTTACCCGCGAAGATTAATCTTTGTTGGTCTGGGGGGATTCCTTCTTTA 240166 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| ||| || || |||| || ||||| | || || Sbjct 240165 TCCTGAATCTTCGCCTTCACATTCTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATG 240106 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| |||| ||||| ||||| |||||||| Sbjct 240105 GTCTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 240071 Score = 122 bits (134), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | ||||| |||| || | |||| || || || || Sbjct 239395 AATTTGCATTCCACCACGTAGACGAAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTT 239336 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||||| || || | ||| || |||||||| |||||||| || | | |||||| Sbjct 239335 GTAGTCGGACAAGGTACGGCCATCCTCCAATTGTTTACCGGCAAAGATAAGACGCTGTTG 239276 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || ||||||||||| || || ||||| | || | |||| |||||||||||| Sbjct 239275 ATCTGGTGGGATTCCTTCTTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTATCGGA 239216 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| | || || || || || || | || ||||| ||||||||||| Sbjct 239215 GGCTTCGACTTCCAAGGTAATTGTCTTTCCGGTCAAGGTCTTTACGAATATTTGCAT 239159 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | | || || |||| || | |||| || || ||||||| Sbjct 240965 ATTTGCATACCTCCGCGGAGACGGAGAACCAAGTGGAGGGTAGATTCCTTTTGAATATTA 240906 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| || || | | ||| || || || || ||||| |||||||||| |||||| Sbjct 240905 TAGTCGGACAAGGTGCGACCATCTTCCAACTGCTTACCGGCGAAAATTAATCGCTGTTGG 240846 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || ||||| || || || || | ||| | || ||| || ||||| Sbjct 240845 TCTGGTGGAATCCCCTCTTTGTCCTGGATCTTCGCTTTCACGTTCTCAATGGTGTCGGAT 240786 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||||| || || || |||||||| || | ||||| ||||| || ||||| Sbjct 240785 GCTTCAACTTCCAGGGTGATGGTTTTACCGGTCAAAGTTTTGACAAAAATCTGCAT 240730 Score = 118 bits (130), Expect = 2e-21 Identities = 128/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| |||||||| || ||||| ||||| ||||| ||||| ||||| Sbjct 238629 TCTTCCAATTGTTTTCCTGCAAAAATCAACCTCTGCTGATCCGGAGGGATTCCCTCTTTG 238570 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | || ||| || ||||||| |||||| || || || || Sbjct 238569 TCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATC 238510 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT--TTTATTAGTAAA 193372 ||||| || || || ||||| ||||| || ||||| ||||| ||||| Sbjct 238509 GTTTTCCCCGTGAGGGTTTTCACAAAGATCTGCATGATTTATCTGTAAA 238461 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||||| | || || |||| ||| | || | ||||| || || |||||||| Sbjct 241641 ACCACCTCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGA 241582 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | | ||| || | ||||| |||||||| || | | |||||| || || || Sbjct 241581 CAGGGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGG 241522 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||||||||| || || ||||| | ||| | |||| ||| || || || | ||||| Sbjct 241521 AATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAAC 241462 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || || ||||| || ||||| ||||| || || |||||||| Sbjct 241461 TTCCAGGGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 Score = 116 bits (128), Expect = 7e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 193145 TCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGA 193204 |||||| |||| |||| || | || || |||||| ||||| || ||||| | | Sbjct 239146 TCGAAGAACCAAGTGCAGCGTGGATTCCTTCTGAATATTGTAGTCCGACAACGTGCGACC 239087 Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | ||||| |||||||| || | | ||| ||||| || || ||||||||||| Sbjct 239086 ATCCTCCAGCTGTTTGCCGGCAAAGATAAGACGCTGCTGATCTGGCGGGATTCCTTCTTT 239027 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || ||||| | ||| | |||| || || || || | ||| ||||| ||||| || Sbjct 239026 GTCCTGAATTTTAGCTTTCACATTTTCGATCGTGTCAGAGGCCTCTACTTCCAGAGTAAT 238967 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||| || || | || || || || || |||||| Sbjct 238966 AGTTTTGCCCGTCAATGTCTTAACGAAGATCTGCATT 238930 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| || | || | ||||| || || |||||||| | || | | Sbjct 241172 CGAAGAACCAAGTGAAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA 241113 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||| ||||||||||| || | |||||| || || || || ||||| || || Sbjct 241112 TCTTCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTG 241053 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| |||||||| || | || ||||| || || || Sbjct 241052 TCCTGGATCTTAGCCTTCACATTCTCGATAGTATCAGATGCTTCGACTTCCAGGGTGATG 240993 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || ||||| |||||||| Sbjct 240992 GTTTTGCCGGTCAGAGTCTTGACAAAGATTTGCAT 240958 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| ||||||||||| || | |||||| || || || || ||||| || || Sbjct 238858 ATCTTCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTT 238799 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || || || | || | |||| || |||||||||| || || || ||||| || Sbjct 238798 GTCCTGGATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCGACATCGAGAGTGAT 238739 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || | || ||||| || || ||||| Sbjct 238738 GGTCTTGCCGGTCAAAGTCTTTACGAAGATCTGCAT 238703 >seq496 Length=1672140 Score = 125 bits (138), Expect = 1e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||| ||||| || | || | | ||| |||| |||||| || ||||| || |||||| Sbjct 1564659 ATATTGTAGTCAGAGAGAGTACGACCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTC 1564600 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || |||||||| || |||||||| || || || || || | || | |||| ||||||| Sbjct 1564599 TGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTTTCAATAGTA 1564540 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||||| ||| || || || || || |||||||| || || || || || || || ||| Sbjct 1564539 TCGGAAGCCTCCACCTCAAGGGTGATGGTTTTACCCGTCAGGGTCTTCACGAAGATCTGC 1564480 Query 193359 AT 193360 || Sbjct 1564479 AT 1564478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899648529755040