Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq223 131 3e-25 seq496 123 5e-23 seq142 86.0 1e-11 >seq223 Length=3708094 Score = 131 bits (144), Expect = 3e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | ||||| | || || || | ||||| || ||| || ||||| || || Sbjct 240072 ATACCCCCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGA-ATATTGTAGTC 240014 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || || || |||| ||||| |||||||| |||||||| ||||| |||||||| || Sbjct 240013 GGACAAGGTGCGACCATCTTCCAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGG 239954 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || ||||||||||| || || ||||| ||| || || || | || || | || Sbjct 239953 GGGAATTCCTTCTTTGTCCTGGATTTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTC 239894 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||| ||||||||||| ||||| | ||| || ||||| Sbjct 239893 GACTTCCAAGGTGATGGTCTTACCAGTTAACGTTTTCACAAAAATTTGCAT 239843 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||||||| || ||||| || || | || || || ||||| || Sbjct 240300 ATACCTCCCCGGAGACGTAGAACCAAATGCAAGGTGGATTCCTTCTGAATGTTATAGTCG 240241 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| ||||| |||||||| || ||||||||||| ||||| || || Sbjct 240240 GACAAGGTGCGACCATCTTCCAACTGTTTACCCGCGAAGATTAATCTTTGTTGGTCTGGG 240181 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||||||||| || || || || ||||| || | || || | ||| Sbjct 240180 GGGATTCCTTCTTTATCCTGAATCTTCGCCTTCACATTCTCAATGGTGTCAGAAGCTTCG 240121 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || ||||| ||||||||||| ||||| | ||| || ||||| Sbjct 240120 ACTTCCAAGGTGATGGTCTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 240071 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || || || | ||||| || || ||| || || || Sbjct 239388 ATTCCACCACGTAGACGAAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCG 239329 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| |||||||||||||| |||||||| | | ||||||||| ||| Sbjct 239328 GACAAGGTACGGCCATCCTCCAATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGT 239269 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || |||||| || ||||| |||| ||| || | ||| Sbjct 239268 GGGATTCCTTCTTTGTCCTGAATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCG 239209 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||| || || || || || || || | ||||| ||||| Sbjct 239208 ACTTCCAAGGTAATTGTCTTTCCGGTCAAGGTCTTTACGAATATTTGCAT 239159 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| || || || || || || |||| |||| ||||| || |||||||| | | | Sbjct 239112 ATATTGTAGTCCGACAACGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATAAGACGC 239053 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| || || ||||||||||| || || |||||| ||| ||||| || | Sbjct 239052 TGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCGATCGTG 238993 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || | |||||||| |||||||| ||||| || || ||||| |||| || |||||| Sbjct 238992 TCAGAGGCCTCTACTTCCAGAGTAATAGTTTTGCCCGTCAATGTCTTAACGAAGATCTGC 238933 Query 192535 ATT 192537 ||| Sbjct 238932 ATT 238930 Score = 116 bits (128), Expect = 7e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 ||||| || | ||||| | || || || | |||| || ||| || |||||||| || Sbjct 240959 ATACCTCCGCGGAGACGGAGAACCAAGTGGAGGGTAGATTCCTTTTGA-ATATTATAGTC 240901 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || || || |||| ||||| || ||||| || || ||||||| |||||| || || Sbjct 240900 GGACAAGGTGCGACCATCTTCCAACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGG 240841 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || || ||||| || || || || ||| || || || | || || | ||| Sbjct 240840 TGGAATCCCCTCTTTGTCCTGGATCTTCGCTTTCACGTTCTCAATGGTGTCGGATGCTTC 240781 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||||||||| || || ||||| | ||| |||||||| Sbjct 240780 AACTTCCAGGGTGATGGTTTTACCGGTCAAAGTTTTGACAAAAATCTGCAT 240730 Score = 111 bits (122), Expect = 3e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||||| | |||||||| | ||||| || || |||||| || ||| Sbjct 239616 ATACCTCCACGCAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCA 239557 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| ||||| ||||| || || || |||||||| ||||| || || Sbjct 239556 GACAAGGTGCGACCATCTTCCAACTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGG 239497 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || || || || || || || | || || | || Sbjct 239496 GGGATGCCTTCTTTATCCTGAATCTTTGCCTTAACGTTTTCAATGGTGTCGGAGGCCTCG 239437 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | || || |||||||| || | ||||| | ||| || |||||| Sbjct 239436 ACTTCCAAGGTGATTGTTTTACCGGTAAGAGTTTTGACAAAAATTTGCATT 239386 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||||| || || | || ||||| | || | ||||| ||| || || || || Sbjct 241641 ACCACCTCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGA 241582 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| |||| ||||| || |||||||| | | |||||| || || || Sbjct 241581 CAGGGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGG 241522 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||| || || |||||| ||| ||||| || | || || | ||| || Sbjct 241521 AATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAAC 241462 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || || |||||||| ||||||| ||||| | || || ||||| Sbjct 241461 TTCCAGGGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 >seq496 Length=1672140 Score = 123 bits (136), Expect = 5e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| || ||||| | || || |||| || | |||||||||||||||||| ||||| Sbjct 1564660 GATATTGTAGTCAGAGAGAGTACGACCATCTTCTAGTTGTTTACCAGCAAAGATCAATCT 1564601 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||||||||| |||||||| || || || || ||| || ||||| |||| Sbjct 1564600 CTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTTTCAATAGT 1564541 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || | || || || || || ||||||||||| || | || || | || ||||| Sbjct 1564540 ATCGGAAGCCTCCACCTCAAGGGTGATGGTTTTACCCGTCAGGGTCTTCACGAAGATCTG 1564481 Query 192534 CAT 192536 ||| Sbjct 1564480 CAT 1564478 >seq142 Length=137952 Score = 86.0 bits (94), Expect = 1e-11 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 50115 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCT 50174 || ||||| || ||||| || |||||| |||||||| || |||||| || |||| Sbjct 57087 GAGTACATCTCGGAATGGACGTTTTCCATGGCTATTTGGAAACCATAAAAACATCGTGCT 57028 Query 50175 TCTGAATACTG-AACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATC 50233 || | ||| | |||||| | ||||| || || | |||||| ||||| ||||| Sbjct 57027 TCCGT-TACAGTAACTTCCTGACTAAATCGCTCGACGAGATTCTCGTTGACAATTCCATC 56969 Query 50234 AGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTA 50289 ||||||||| ||||| || ||||| | ||||| ||| ||||| ||||||| Sbjct 56968 AGATGCTGCAAAGAAGGCCAAAACATGCGATATAAAGTGTCGCTCATTGTCTTTTA 56913 Score = 84.2 bits (92), Expect = 4e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 49848 TCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTA 49907 ||||| || || || | |||||| || ||||||| || ||||| | ||| | || || Sbjct 57450 TCGTCTCTGGAAATGAGTTCATTGCTGAAAGTTAGCCCAGGCATAAGTCCGCGTTTCTTC 57391 Query 49908 AGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCT 49967 ||||| ||||| | |||||||||| || || || || || || ||||| || Sbjct 57390 AGCCAGAATATGGCAGCAAAACTACCGCTGAAAAAGATTCCTTCTACTGCTGCAAAGGCC 57331 Query 49968 ATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCAATTTATAGCCCAATCTGCt 50027 | | || ||||||| || |||||| ||||||||||| ||||| | ||| Sbjct 57330 ACGACTCGCTCTCCAAAATTTGCACTATCATGATTGATCCAATTTATTGCCCAGTTAGCT 57271 Query 50028 ttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 |||||| || | |||||| || || || || || || || Sbjct 57270 TTTTTTGCGACACAAGGTAGGTTCTCGATGGCATTGAACAA 57230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984473415674700