Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq223 122 2e-22 seq496 113 8e-20 seq142 87.8 3e-12 >seq223 Length=3708094 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || |||| || ||||| || || | || || ||| ||||| || Sbjct 240300 ATACCTCCCCGGAGACGTAGAACCAAATGCAAGGTGGATTCCTTCTGAATGTTATAGTCG 240241 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || ||||| |||||||| || || |||||||| |||||||| || Sbjct 240240 GACAAGGTGCGACCATCTTCCAACTGTTTACCCGCGAAGATTAATCTTTGTTGGTCTGGG 240181 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||||||||| || || || || ||||| || || || || | ||| Sbjct 240180 GGGATTCCTTCTTTATCCTGAATCTTCGCCTTCACATTCTCAATGGTGTCAGAAGCTTCG 240121 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || ||||| ||||||||||| ||||| | || || ||||| Sbjct 240120 ACTTCCAAGGTGATGGTCTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 240071 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||||||||| || || || | || | || ||||| || ||||| || |||||||||| Sbjct 240912 AATATTATAGTCGGACAAGGTGCGACCATCTTCCAACTGCTTACCGGCGAAAATTAATCG 240853 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||||||| ||||| || || ||||| || || || || ||| || || || || Sbjct 240852 CTGTTGGTCTGGTGGAATCCCCTCTTTGTCCTGGATCTTCGCTTTCACGTTCTCAATGGT 240793 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || | ||| ||||| || || ||||||||||| || || ||||| | || ||||| Sbjct 240792 GTCGGATGCTTCAACTTCCAGGGTGATGGTTTTACCGGTCAAAGTTTTGACAAAAATCTG 240733 Query 172067 CAT 172069 ||| Sbjct 240732 CAT 240730 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || || | |||||||| || || | || || ||| || ||||| Sbjct 239844 ATACCCCCACGGAGACGGAGAACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCG 239785 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || | |||||| ||||||||||| |||||||| ||||| ||| Sbjct 239784 GACAAGGTGCGCCCATCTTCTAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGT 239725 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| ||||| ||||| || || || ||||| || || || || | ||| Sbjct 239724 GGAATTCCCTCTTTGTCTTGAATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCG 239665 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || || || ||||| ||||| || || | || |||||||| Sbjct 239664 ACTTCCAAGGTGATAGTCTTACCGGTTAAAGTCTTCACAAAAATCTGCAT 239615 Score = 111 bits (122), Expect = 3e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||| || || || || | || | || |||| ||||| || ||||| || | | Sbjct 239113 AATATTGTAGTCCGACAACGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATAAGACG 239054 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || || || ||||||||||| || || |||||| ||| ||||| || || Sbjct 239053 CTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCGATCGT 238994 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || | |||||||| |||||||| ||||| || || ||||| |||| ||| ||||| Sbjct 238993 GTCAGAGGCCTCTACTTCCAGAGTAATAGTTTTGCCCGTCAATGTCTTAACGAAGATCTG 238934 Query 172067 CATT 172070 |||| Sbjct 238933 CATT 238930 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||||||||| ||||| || | | |||||| || ||||| ||||||||||| Sbjct 239313 TCCTCCAATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCTTTG 239254 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || |||||| || ||||| |||||||| || | ||| ||||| | ||||| Sbjct 239253 TCCTGAATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGACTTCCAAGGTAATT 239194 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || | |||||| ||||| Sbjct 239193 GTCTTTCCGGTCAAGGTCTTTACGAATATTTGCAT 239159 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || || | || || || | ||||| || || |||||| || || Sbjct 240072 ATACCCCCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCG 240013 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || ||||| |||||||| ||||| || ||||| ||||| || || Sbjct 240012 GACAAGGTGCGACCATCTTCCAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGG 239953 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| || || ||||| ||| || || || || || || | || Sbjct 239952 GGAATTCCTTCTTTGTCCTGGATTTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCG 239893 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || ||||| ||||||||||| ||||| | || || ||||| Sbjct 239892 ACTTCCAAGGTGATGGTCTTACCAGTTAACGTTTTCACAAAAATTTGCAT 239843 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||||| || || | || ||||| | || | ||||| || || || || || Sbjct 241641 ACCACCTCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGA 241582 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | || |||| ||||| || ||||| || | | ||||||||| || || Sbjct 241581 CAGGGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGG 241522 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||||||||| || || |||||| ||| ||||| || || || || | ||| || Sbjct 241521 AATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAAC 241462 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| || || |||||||| ||||||| ||||| | ||| || ||||| Sbjct 241461 TTCCAGGGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | || || | |||||||| | ||||| || || ||||| || || Sbjct 239616 ATACCTCCACGCAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCA 239557 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || ||||| ||||| || || ||||||||||| |||||||| || Sbjct 239556 GACAAGGTGCGACCATCTTCCAACTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGG 239497 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||||||||| || || || || || || || || || || | || Sbjct 239496 GGGATGCCTTCTTTATCCTGAATCTTTGCCTTAACGTTTTCAATGGTGTCGGAGGCCTCG 239437 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | || || |||||||| || | ||||| | || || |||||| Sbjct 239436 ACTTCCAAGGTGATTGTTTTACCGGTAAGAGTTTTGACAAAAATTTGCATT 239386 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| |||| | || | ||| | || | || || ||| || || || Sbjct 241415 ATACCACCTCGCAGTCTGAGGACAAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCC 241356 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || |||||||| || || || || || ||||| || ||||| ||| Sbjct 241355 GACAAGGTACGCCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGT 241296 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||| || || || || || || ||| || || || || || || | ||| Sbjct 241295 GGGATTCCCTCCTTGTCCTGGATCTTTGCTTTCACGTTCTCGATGGTGTCGGATGCTTCA 241236 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||||||||| || || || || | ||| || ||||| Sbjct 241235 ACCTCCAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 241186 >seq496 Length=1672140 Score = 113 bits (124), Expect = 8e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| || || || | || || | || || | ||||||||||||||| || |||||| Sbjct 1564659 ATATTGTAGTCAGAGAGAGTACGACCATCTTCTAGTTGTTTACCAGCAAAGATCAATCTC 1564600 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || |||||||| |||||||| || || || || ||| || ||||| |||||| Sbjct 1564599 TGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTTTCAATAGTA 1564540 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | || || || || || ||||||||||| || | || || | ||| |||||| Sbjct 1564539 TCGGAAGCCTCCACCTCAAGGGTGATGGTTTTACCCGTCAGGGTCTTCACGAAGATCTGC 1564480 Query 172068 AT 172069 || Sbjct 1564479 AT 1564478 >seq142 Length=137952 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 39148 CTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 39207 ||||||| || || || | |||||| || ||||||| || ||||| | ||| | || | Sbjct 57452 CTTCGTCTCTGGAAATGAGTTCATTGCTGAAAGTTAGCCCAGGCATAAGTCCGCGTTTCT 57393 Query 39208 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATG 39267 | ||||| ||||| | |||||||||| || || || || || || ||||| | Sbjct 57392 TCAGCCAGAATATGGCAGCAAAACTACCGCTGAAAAAGATTCCTTCTACTGCTGCAAAGG 57333 Query 39268 CTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTG 39327 | | | || ||||||| || |||||| ||||||||||| ||||| | | Sbjct 57332 CCACGACTCGCTCTCCAAAATTTGCACTATCATGATTGATCCAATTTATTGCCCAGTTAG 57273 Query 39328 CtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 39370 |||||||| || | |||||| || || || || || || || Sbjct 57272 CTTTTTTTGCGACACAAGGTAGGTTCTCGATGGCATTGAACAA 57230 Score = 86.0 bits (94), Expect = 1e-11 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 39417 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCT 39476 || ||||| || ||||| || |||||| |||||||| || |||||| | |||| Sbjct 57087 GAGTACATCTCGGAATGGACGTTTTCCATGGCTATTTGGAAACCATAAAAACATCGTGCT 57028 Query 39477 TCTGAATACTG-AACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATC 39535 || | ||| | |||||| | ||||| || || | |||||| ||||| ||||| Sbjct 57027 TCCGT-TACAGTAACTTCCTGACTAAATCGCTCGACGAGATTCTCGTTGACAATTCCATC 56969 Query 39536 AGATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTA 39591 ||||||||| ||||| || ||||||| ||||| ||| ||||| ||||||| Sbjct 56968 AGATGCTGCAAAGAAGGCCAAAACATGCGATATAAAGTGTCGCTCATTGTCTTTTA 56913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905130093987600