Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq76 109 2e-18 seq99 86.0 2e-11 >seq76 Length=497347 Score = 109 bits (120), Expect = 2e-18 Identities = 189/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| |||||||||||||| ||||||||| | ||||||||||| ||| Sbjct 320326 TCCATAGCCTTGATCAAACGACGCTGAATGTAACCAGTTTCTGCAGTTTTTACAGCAGTA 320385 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| ||||| | || || |||||||| |||||| | | ||| ||| || || Sbjct 320386 TCAATGAGACCTTCTCGTCCTCCCATAGCGTGGAAGTAAAACTCAGAAGGTGTGAGACCG 320445 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | || | || || || || | | |||||| || |||| || |||| | Sbjct 320446 GCAAGGTAAGAATTTTCCACAAATCCTCTAGACTCGGGACCGTAATCATC---CTTGATG 320502 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || || ||||| | || | || |||| || | || || ||||||||||| Sbjct 320503 AAATGAGGTAGGGTTCGTTTACGGAATCCAAATGGTATTCTTTTACCTTCAACGTTCTGT 320562 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||||| | || | ||| | ||| || ||||| Sbjct 320563 TGTCCTACACAGGCAATAACCTGGGAGATATT 320594 Score = 84.2 bits (92), Expect = 6e-11 Identities = 104/139 (75%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 301815 AATTTC-TTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAA 301873 |||||| |||||| | || ||||| ||||||||| ||| |||| || ||||||| Sbjct 319271 AATTTCCTTCAAT-CTTGGCACACCCAAGGTTACGTT---CTTCGACGATACTCCAGCAA 319326 Query 301874 AGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCA 301933 ||||||| || ||||| || | ||||| | |||||||||| | ||| ||||| | Sbjct 319327 AGTGGAAGGTGTTCAGTGTCATCTGAGTCGCGGGCTCACCAAGAGATTGAGCCGCTAATG 319386 Query 301934 TACCAACCATTTCTCCTGG 301952 |||||||||||| || || Sbjct 319387 CACCAACCATTTCCCCAGG 319405 >seq99 Length=246160 Score = 86.0 bits (94), Expect = 2e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 || || ||||| || ||||||||||| | | |||||| | | || || || || | | Sbjct 137602 CCCACCGCATCTATCTCGTCAATGAATAATATACACGGTGCGTGTTTTCGGGCCATGGTA 137661 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | || | || | ||||| || | |||||| ||||||| | ||| || ||| | Sbjct 137662 AACATGTCACGGACTCTGGATGGGCCGACTCCAACAAACATTTCCAAAAACTCGGAACCA 137721 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || || |||||| | || |||||||| || || ||| | ||||| || || || Sbjct 137722 GACACAGTAATGAAAGGAACGTTTGCTTCACCGGCCGTTGCTTTTGCCAGGAGAGTTTTC 137781 Query 289210 CCTGTTCCAGGTGGTCC 289226 || ||||||||||| || Sbjct 137782 CCAGTTCCAGGTGGACC 137798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471807756299914