Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq168 185 7e-42 seq223 107 2e-18 >seq168 Length=1844999 Score = 185 bits (204), Expect = 7e-42 Identities = 287/406 (71%), Gaps = 12/406 (3%) Strand=Plus/Minus Query 34254 GCCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATG---TTCTTTTTAGCGGACAC 34310 ||| ||| |||||| ||||| ||||| || |||| || | ||||||| || Sbjct 136644 GCCATGACGACCGCAAGCTTTACAGCCTTGGAAGAT--TGCCATCCTTTTTA-----CA- 136593 Query 34311 GATGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACC 34370 ||| | |||||||| || || ||||| |||| |||| ||| | || | || || || Sbjct 136592 GATAAA-TCAGTCTCAGGATTATCACACGCCGGGCACAGAACATATTTCCTAATAAATCC 136534 Query 34371 ATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 ||| || || || || | ||| | | ||||||||| || ||||||||| ||| || || Sbjct 136533 ATCCAGAAGATCTTGCAGCTTGGCTGCGTCGTGGGACCCATTGACGATGTATCTGTCATT 136474 Query 34431 TTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAAT 34490 |||| | |||| || ||||| || || || || || ||||||||||| || ||||| | Sbjct 136473 TTTGAAGTCGAATTGAGTTTGGGCACCAAGTTCACATCCGAAGTACTTAGTAGGGTACGT 136414 Query 34491 GGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCC 34550 | || | ||| ||||| || | ||| ||||||||| ||||| || || ||||| Sbjct 136413 TGGGGGTCTGTCAATGGCCTTAGCAACTTCAATCATGTTGACCATGACGGTTTTTATGCC 136354 Query 34551 GTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTC 34610 || || || ||||| |||||||| ||| || |||||||| || || ||||| | ||| Sbjct 136353 ATTACCTTTGCCTTCTACCTTGGCTTGGATCCGAGGCATTTTATAACGATAGAATGGGTC 136294 Query 34611 CGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCTGGTGTT 34656 || ||||| || |||| ||||||| ||| ||||| || Sbjct 136293 TTTGACCGCACGGTTTACATTCAAGCTCCCCATGGTGACTGGTATT 136248 >seq223 Length=3708094 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| ||||| || || ||||| ||| | ||| ||| | | Sbjct 239843 ATGCAAATTTTTGTGAAAACGTTAACTGGTAAGACCATCACCTTGGAAGTCGAGGCCTCC 239902 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| || || ||||||||||| | ||| |||||| Sbjct 239903 GACACCATCGAAAACGTCAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAA 239962 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | ||| ||||||||| |||| |||| | || || | || ||||| Sbjct 239963 CAAAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAAT 240022 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| |||||||| | ||| |||| | | || || ||||| Sbjct 240023 ATTCAAAAGGAATCTACTCTTCACTTGGTTCTCCGTCTCCGTGGGGG 240069 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 ||||||||||| || || || || ||||| || || |||||| | ||| || ||||| Sbjct 239159 ATGCAAATATTCGTAAAGACCTTGACCGGAAAGACAATTACCTTGGAAGTCGAAGCCTC- 239217 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||||| | | | || || || ||| ||||||||||| | || ||||| Sbjct 239218 CGATACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAAGAAGGAATCCCACCAGATCA 239277 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | ||||| | ||| |||||||| ||||||||| | | || || | || ||||| Sbjct 239278 ACAGCGTCTTATCTTTGCCGGTAAACAATTGGAGGATGGCCGTACCTTGTCCGACTACAA 239337 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| ||||| |||||||| | ||| |||| Sbjct 239338 CATCCAAAAGGAATCTACTCTCCACTTGGT 239367 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGC--CT 110329 |||||||| ||||| ||||||||||| || || ||||| ||| | ||| || ||| || Sbjct 240071 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAGACCATCACCTTGGAAGTCGAAGCTTCT 240130 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | || || ||||||| || |||||||| | ||| || Sbjct 240131 GAC---ACCATTGAGAATGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCCCCAGAC 240187 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||||||| | || | |||||||||||| |||| |||| | || || | || || Sbjct 240188 CAACAAAGATTAATCTTCGCGGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTAT 240247 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || ||||| || ||||| |||| || | || || || || Sbjct 240248 AACATTCAGAAGGAATCCACCTTGCATTTGGTTCTACGTCTCCGGGGAGG 240297 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || || || || || |||||||| ||||| | ||| ||| | Sbjct 238930 AATGCAGATCTTCGTTAAGACATTGACGGGCAAAACTATTACTCTGGAAGTAGAGGCCTC 238989 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | || ||| || ||| ||||||||||| | || ||||| Sbjct 238990 TGACACGATCGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCGCCAGATCA 239049 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | ||||| | ||| || |||||||||||||||| | || || |||| ||||| Sbjct 239050 GCAGCGTCTTATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACGTTGTCGGACTACAA 239109 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || ||||| ||| ||||| |||| | |||| || || || Sbjct 239110 TATTCAGAAGGAATCCACGCTGCACTTGGTTCTTCGACTTCGTGGAGG 239157 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| |||||||||||| | ||||| ||||| || ||| | ||| ||| | Sbjct 239386 AATGCAAATTTTTGTCAAAACTCTTACCGGTAAAACAATCACCTTGGAAGTCGAGGCCTC 239445 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || | | | || || |||||| || ||||||||| | ||| || || Sbjct 239446 CGACACCATTGAAAACGTTAAGGCAAAGATTCAGGATAAAGAAGGCATCCCCCCAGACCA 239505 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||| | |||| || || |||||| |||| |||| | || || | || ||||| Sbjct 239506 ACAAAGATTAATTTTCGCCGGCAAACAGTTGGAAGATGGTCGCACCTTGTCTGACTACAA 239565 Query 110452 CATTCAAAAAGAATCTAC 110469 || || || |||||||| Sbjct 239566 TATCCAGAAGGAATCTAC 239583 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 ||||| || ||||| || ||||||||||| || || || ||| | ||| || ||||| Sbjct 239615 ATGCAGATTTTTGTGAAGACTTTAACCGGTAAGACTATCACCTTGGAAGTCGAAGCCTC- 239673 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || ||| | || || |||||| |||||||| || | || || || Sbjct 239674 CGACACCATCGAAAATGTGAAGGCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCA 239733 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || ||| | |||| ||| || ||||| || || |||| | || || | |||||||| Sbjct 239734 GCAGAGATTGATTTTTGCTGGCAAACAACTAGAAGATGGGCGCACCTTGTCCGATTACAA 239793 Query 110452 CATTCAAAAAGAATCTACGTTGCA 110475 ||||||||| ||||| || ||||| Sbjct 239794 CATTCAAAAGGAATCCACCTTGCA 239817 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||||||||| ||||| |||||||| ||| | ||| || | | Sbjct 240730 ATGCAGATTTTTGTCAAAACTTTGACCGGTAAAACCATCACCCTGGAAGTTGAAGCATCC 240789 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || ||| |||||| |||||||| || | || || ||| Sbjct 240790 GACACCATTGAGAACGTGAAAGCGAAGATCCAGGACAAAGAGGGGATTCCACCAGACCAA 240849 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | |||| || ||||| ||| |||| |||| | || || | || || || Sbjct 240850 CAGCGATTAATTTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACCTTGTCCGACTATAAT 240909 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||| |||||||| | ||| |||| Sbjct 240910 ATTCAAAAGGAATCTACCCTCCACTTGGT 240938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412838973553346