Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq495 140 5e-27 seq496 91.5 2e-12 >seq495 Length=2556717 Score = 140 bits (154), Expect = 5e-27 Identities = 178/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| |||||||| ||||| |||||||||| |||||| ||| || | | Sbjct 1120604 TGTATTTGGTGACCGCCTTGGTGCCCTCACTGACGGCGTGCTTGGCCAATTCACCAGGTA 1120663 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | ||| | || |||||||| || || |||| | ||| || ||| ||||| ||| Sbjct 1120664 ACAGCAGCCTGACCGCGGTCTGAATTTCCCGGGAGGTGATGGTCGAGCGTTTGTTGTAGT 1120723 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| | ||| | ||||||| | ||||||| |||| ||||||||||| || ||| Sbjct 1120724 GGGCGAGACGCGAC--GCCTCGGCGGCGATGCGTTCGAATATGTCGTTGACGAAGCTGTT 1120781 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| ||| | || || || ||||||||| || || || || ||||| Sbjct 1120782 CATGATGCTCATCGCCTTGCTCGATATTCCGGTGTCGGGGTGGACTTGTTTCAGAACCTT 1120841 Query 1485708 GTA 1485710 ||| Sbjct 1120842 GTA 1120844 Score = 140 bits (154), Expect = 5e-27 Identities = 178/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| |||||||| ||||| |||||||||| |||||| ||| || | | Sbjct 1128541 TGTATTTGGTGACCGCCTTGGTGCCCTCACTGACGGCGTGCTTGGCCAATTCACCAGGTA 1128600 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | ||| | || |||||||| || || |||| | ||| || ||| ||||| ||| Sbjct 1128601 ACAGCAGCCTGACCGCGGTCTGAATTTCCCGGGAGGTGATGGTCGAGCGTTTGTTGTAGT 1128660 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| | ||| | ||||||| | ||||||| |||| ||||||||||| || ||| Sbjct 1128661 GGGCGAGACGCGAC--GCCTCGGCGGCGATGCGTTCGAATATGTCGTTGACGAAGCTGTT 1128718 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| ||| | || || || ||||||||| || || || || ||||| Sbjct 1128719 CATGATGCTCATCGCCTTGCTCGATATTCCGGTGTCGGGGTGGACTTGTTTCAGAACCTT 1128778 Query 1485708 GTA 1485710 ||| Sbjct 1128779 GTA 1128781 >seq496 Length=1672140 Score = 91.5 bits (100), Expect = 2e-12 Identities = 166/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || ||||||||||||||||| || || ||| |||||| |||||| || || | | Sbjct 1156858 TATTTGGTGACGGCCTTGGTGCCTTCACTGACAGCGTGCTTGGCCAACTCTCCAGGAAGC 1156799 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGTGC 1485589 | || | ||||| |||||||| || || | ||| || | |||||| |||| Sbjct 1156798 AAGAGTCTGACGGCAGTCTGGATTTCCCGAGAAGTGATGGTCGATCTCTTGTTGTAGTGT 1156739 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| || || | |||| | || || |||| || |||||||| || ||||| Sbjct 1156738 GCG--AGACGAGATGATTCGGCAGCAATACGTTCGAAGATATCGTTGACGAAACTGTTCA 1156681 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| ||| |||| || || ||| |||||||||||||| | ||||||| Sbjct 1156680 TGATGCTCATCGCTTTACTGGAAATACCAGTGTCCGGGTGCACCTGCTTCAATACCTTGT 1156621 Query 1485710 A 1485710 | Sbjct 1156620 A 1156620 Score = 86.0 bits (94), Expect = 1e-10 Identities = 166/243 (68%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| || ||||| |||||||| || || ||| |||||| |||||| || || | | Sbjct 892673 TGTATTTAGTGACAGCCTTGGTGCCTTCACTGACAGCGTGCTTGGCCAACTCTCCAGGAA 892732 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || | ||||| |||||||| || || | ||| || | |||||| ||| Sbjct 892733 GCAAGAGTCTGACGGCAGTCTGGATTTCCCGAGAAGTGATGGTCGATCTCTTGTTGTAGT 892792 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || || | |||| | || || |||| || |||||||| || ||| Sbjct 892793 GTGCG--AGACGAGAAGATTCGGCAGCAATACGTTCGAAGATATCGTTGACGAAACTGTT 892850 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| ||| |||| || || ||| |||||||||||||| | ||||| Sbjct 892851 CATGATGCTCATCGCTTTACTGGAAATACCAGTGTCAGGGTGCACCTGCTTCAATACCTT 892910 Query 1485708 GTA 1485710 ||| Sbjct 892911 GTA 892913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916190872479158