Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq223 163 6e-35 seq496 145 1e-29 seq168 120 6e-22 >seq223 Length=3708094 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || ||| |||||||| || ||||||||||| ||||| ||||| || |||| Sbjct 239615 TACCTCCACGCAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCAG 239556 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||| | ||||| || || || |||| ||||||||| ||||| | Sbjct 239555 ACAAGGTGCGACCATCTTCCAACTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGGG 239496 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||| ||||||||||| || || |||||||| || || | || | Sbjct 239495 GGATGCCTTCTTTATCCTGAATCTTTGCCTTAACGTTTTCAATGGTGTCGGAGGCCTCGA 239436 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||||| || || || || || || | || || ||||| || |||||| Sbjct 239435 CTTCCAAGGTGATTGTTTTACCGGTAAGAGTTTTGACAAAAATTTGCATT 239386 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| |||||||| |||| || ||||| || || || || ||||| | Sbjct 239843 TACCCCCACGGAGACGGAGAACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGG 239784 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || |||||||||||||| |||||||| || | ||| || || ||||| | Sbjct 239783 ACAAGGTGCGCCCATCTTCTAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTG 239724 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| || || |||||||||||||| || |||||||| || || || | ||| | Sbjct 239723 GAATTCCCTCTTTGTCTTGAATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGA 239664 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || ||||| || || || ||||| ||||| |||||||| Sbjct 239663 CTTCCAAGGTGATAGTCTTACCGGTTAAAGTCTTCACAAAAATCTGCAT 239615 Score = 159 bits (176), Expect = 7e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || || || || || ||||||||||| || || || || || || | | || Sbjct 238918 ACGGAGGACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCC 238859 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | ||| ||||| |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 238858 ATCTTCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTT 238799 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || |||||||| |||||||| || ||| || || | ||| || Sbjct 238798 GTCCTGGATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCGACATCGAGAGTGAT 238739 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| ||||| |||||||| || |||||||| Sbjct 238738 GGTCTTGCCGGTCAAAGTCTTTACGAAGATCTGCAT 238703 Score = 159 bits (176), Expect = 7e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| ||||| ||||| ||||||||||| || || || || || || || | | | || Sbjct 239374 ACGAAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCC 239315 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 || || | |||||| || |||||||| || | ||||||||||| || |||||||| || Sbjct 239314 ATCCTCCAATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCTTT 239255 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || ||||| || || || ||||||||||| ||||| | ||| |||||||| || || Sbjct 239254 GTCCTGAATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGACTTCCAAGGTAAT 239195 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||| |||||||| ||||| ||||| Sbjct 239194 TGTCTTTCCGGTCAAGGTCTTTACGAATATTTGCAT 239159 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| ||||| ||||||||||| || || ||||| || || | Sbjct 240071 TACCCCCACGGAGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGG 240012 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||| | ||||| || |||||||| | ||||||||||||||| | Sbjct 240011 ACAAGGTGCGACCATCTTCCAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGG 239952 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || || || || |||||||| || ||||| || || || | || | Sbjct 239951 GAATTCCTTCTTTGTCCTGGATTTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGA 239892 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || ||||| || || ||||| || ||||| || ||||| Sbjct 239891 CTTCCAAGGTGATGGTCTTACCAGTTAACGTTTTCACAAAAATTTGCAT 239843 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| ||||| ||||| || || ||||||||||| || || || || || Sbjct 241184 CCTCCACGGAGACGAAGAACCAAGTGAAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAG 241125 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| | ||| ||||| |||||||| ||||| || || ||||| || Sbjct 241124 AGGGTGCGGCCATCTTCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGG 241065 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || || ||||| || || ||||| || || |||||| | ||| ||| Sbjct 241064 ATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCGATAGTATCAGATGCTTCGACT 241005 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || ||||| |||| ||||| ||||| || ||||| Sbjct 241004 TCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTGACAAAGATTTGCAT 240958 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||| | |||||||| || || || || ||||||||||| || || || || || Sbjct 241641 ACCACCTCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGA 241582 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | ||| || || || ||||| || |||||||| || | ||||| ||||| || Sbjct 241581 CAGGGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGG 241522 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| || || ||||| || ||||| ||||||||||| || || | ||| || Sbjct 241521 AATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAAC 241462 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || ||||| || | || || || || || ||||| Sbjct 241461 TTCCAGGGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 Score = 116 bits (128), Expect = 7e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || | || || | || || || ||||| ||||| || || || || | Sbjct 241414 TACCACCTCGCAGTCTGAGGACAAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCCG 241355 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| | ||| ||||| || ||||| | |||||| || ||||| | Sbjct 241354 ACAAGGTACGCCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTG 241295 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| || || ||||||||||| || || || || || || | ||| | Sbjct 241294 GGATTCCCTCCTTGTCCTGGATCTTTGCTTTCACGTTCTCGATGGTGTCGGATGCTTCAA 241235 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || || || || ||||| |||||||| || || ||||| Sbjct 241234 CCTCCAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 241186 >seq496 Length=1672140 Score = 145 bits (160), Expect = 1e-29 Identities = 145/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| ||||| || ||||| ||| | | ||| |||||||||||||| ||||||||||| Sbjct 1564665 TTCTGGATATTGTAGTCAGAGAGAGTACGACCATCTTCTAGTTGTTTACCAGCAAAGATC 1564606 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | ||| || ||||| || || ||||||||||| || || ||||| || || ||||||||| Sbjct 1564605 AATCTCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTTTCA 1564546 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || ||||| || || || || | || || || || || |||| ||||| || || Sbjct 1564545 ATAGTATCGGAAGCCTCCACCTCAAGGGTGATGGTTTTACCCGTCAGGGTCTTCACGAAG 1564486 Query 82803 ATCTGCAT 82810 |||||||| Sbjct 1564485 ATCTGCAT 1564478 >seq168 Length=1844999 Score = 120 bits (132), Expect = 6e-22 Identities = 136/180 (76%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 198340 TATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAA 198399 |||||||| || | ||||| ||| || || ||||||||||||||| ||||||| |||| Sbjct 1481444 TATGGAATTCAGCACAAATTCAGTTGGTACAGGAAGGAAAAATGCATGGTTTTTTGAGAA 1481503 Query 198400 TGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGC-TTTGAGTTAT 198458 |||| ||||| |||||||| || || ||||| || ||||| ||| | || |||| | | Sbjct 1481504 TGTATTGGGCAAAAAAGATTCTAGAGTGGACCAGTACACCTGAACAAGCACTTGAATGGT 1481563 Query 198459 AGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAACGGATACGTAGGT 198518 | || |||||||| |||| || | || |||| |||||| | |||||||| ||| Sbjct 1481564 CG-ATATATCTAAATGATAAATATAGCATGGATGGCAGGGATCCAAGTGGATACGTTGGT 1481622 Score = 89.7 bits (98), Expect = 1e-12 Identities = 134/184 (73%), Gaps = 10/184 (5%) Strand=Plus/Plus Query 198046 ATGCCTTGAGTAATTTATCTCCATGGTTACATTTTGGTCATG-TATCTCCACAACGCGTT 198104 |||| ||||| |||||||| || ||||| || ||||| |||| ||||| || ||||| Sbjct 1481062 ATGCTTTGAGCAATTTATCACCGTGGTTCCACTTTGG-CATGATATCTGTTCA--GCGTT 1481118 Query 198105 GCCTTA--GAAGTATTAAAATGTATACGAGAAAACaaaaaaaaC--GTTGAAACGTTTAT 198160 | || ||||||| ||||| || | | || ||| | ||| ||||||| ||||| Sbjct 1481119 GTATTTTGGAAGTATCAAAATATAAA--AAAACACATACTAAATCGGTTGAAAGCTTTAT 1481176 Query 198161 AGATGAAATAATTATAAGAAGAGAACTGTCGGATAATTTTTGTTACTATAATAAACATTA 198220 || ||| ||| | |||||||||||| |||||||| || | ||||| ||||||| Sbjct 1481177 GGAGGAAGCCATTGTCAGAAGAGAACTGAGTGATAATTTCTGCTTTTATAACGAACATTA 1481236 Query 198221 CGAT 198224 ||| Sbjct 1481237 TGAT 1481240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981820633416958