Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq168 100 5e-16 >seq168 Length=1844999 Score = 100 bits (110), Expect = 5e-16 Identities = 134/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 182729 ATGCCTTGAGTAATTTATCTCCGTGGTTACATTTTGGACATG-TATCTCCACAACGTGTT 182787 |||| ||||| |||||||| |||||||| || ||||| |||| ||||| || ||| | Sbjct 1481062 ATGCTTTGAGCAATTTATCACCGTGGTTCCACTTTGG-CATGATATCTGTTCAGCGTTGT 1481120 Query 182788 GCTTTAGAAGTATTAAAATGTATACGAGAAAACaaaaaaaaC--GTTGAAACGTTTATAG 182845 ||| ||||||| ||||| || | | || ||| | ||| ||||||| ||||| | Sbjct 1481121 ATTTTGGAAGTATCAAAATATAAA--AAAACACATACTAAATCGGTTGAAAGCTTTATGG 1481178 Query 182846 ATGAAATAATTGTAAGAAGAGAACTATCGGATAATTTTTGTTACTATAATAAACATTACG 182905 | ||| ||||| ||||||||||| |||||||| || | ||||| ||||||| | Sbjct 1481179 AGGAAGCCATTGTCAGAAGAGAACTGAGTGATAATTTCTGCTTTTATAACGAACATTATG 1481238 Query 182906 AT 182907 || Sbjct 1481239 AT 1481240 Score = 98.7 bits (108), Expect = 2e-15 Identities = 134/183 (73%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 183023 TATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAA 183082 |||||||| || ||||||| ||| || | ||||||||||||||| ||||||| ||| Sbjct 1481444 TATGGAATTCAGCACAAATTCAGTTGGTACAGGAAGGAAAAATGCATGGTTTTTTGAGAA 1481503 Query 183083 TGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGC-TTTGAGTTAT 183141 |||| ||||| |||||||| || || ||||| || || || ||| | || |||| | | Sbjct 1481504 TGTATTGGGCAAAAAAGATTCTAGAGTGGACCAGTACACCTGAACAAGCACTTGAATGGT 1481563 Query 183142 AG---TATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTA 183198 | |||||| |||| |||| || | | || || | |||||| | |||||||| Sbjct 1481564 CGATATATCTAAATGATAAATA--TAGCA--TGGATGGCAGGGATCCAAGTGGATACGTT 1481619 Query 183199 GGT 183201 ||| Sbjct 1481620 GGT 1481622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903405305241920