Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq223 105 6e-18 seq496 82.4 7e-11 seq2 82.4 7e-11 >seq223 Length=3708094 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| |||||||| || || ||| ||| | || || | Sbjct 239592 AAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCA-TCTTCCAA 239534 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||| ||| |||| | | || ||||| || ||||||||||| || || || Sbjct 239533 CTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGGGGGATGCCTTCTTTATCCTGAAT 239474 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||| | | |||| ||||||| || ||| || || | ||||| ||||| || Sbjct 239473 CTTTGCCTTAACGTTTTCAATGGTGTCGGAGGCCTCGACTTCCAAGGTGATTGTTTTACC 239414 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| |||||||| || ||||| ||||| Sbjct 239413 GGTAAGAGTTTTGACAAAAATTTGCAT 239387 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || || || || ||||| || ||| || ||| ||| | || || | Sbjct 240935 AAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCGGACAAGGTGCGACCA-TCTTCCAA 240877 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| |||| | ||||| ||||| || || || || || ||||| ||| Sbjct 240876 CTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTGGAATCCCCTCTTTGTCCTGGAT 240817 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || | | ||||| ||||||| | || || || | ||||| |||||| || Sbjct 240816 CTTCGCTTTCACGTTCTCAATGGTGTCGGATGCTTCAACTTCCAGGGTGATGGTTTTACC 240757 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| |||||| || ||||||||||| Sbjct 240756 GGTCAAAGTTTTGACAAAAATCTGCAT 240730 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | |||||| || || || || ||||||||| || ||| | || || || Sbjct 239820 AAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCGCCCATCTTCTAGT 239761 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || ||||| || |||| | | ||||||||| || || || || || ||||| ||| Sbjct 239760 TGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCTTGAATC 239701 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||| | | || | ||||||| || || || || | ||||| || || ||| Sbjct 239700 TTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTCTTACCG 239641 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || | ||| || || ||||||||||| Sbjct 239640 GTTAAAGTCTTCACAAAAATCTGCAT 239615 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| || |||||||| || ||||| ||| | ||| | | | || || | Sbjct 241163 AAGTGAAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAA 241105 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || | || || | ||||||||| || ||||| || |||||||| ||| Sbjct 241104 TTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGAT 241045 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||| | || || | | || || || | ||||| ||||||||| Sbjct 241044 CTTAGCCTTCACATTCTCGATAGTATCAGATGCTTCGACTTCCAGGGTGATGGTTTTGCC 240985 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||| || || || || ||||| Sbjct 240984 GGTCAGAGTCTTGACAAAGATTTGCAT 240958 >seq496 Length=1672140 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 133538 CTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGT 133597 |||||| || || || || ||||||||||| |||||| ||||| | |||| || Sbjct 1564600 CTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTTTCAATAGT 1564541 Query 133598 GTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTG 133657 |||| | |||||| || | ||||| |||||| || ||||| || || ||||| ||||| Sbjct 1564540 ATCGGAAGCCTCCACCTCAAGGGTGATGGTTTTACCCGTCAGGGTCTTCACGAAGATCTG 1564481 Query 133658 CAT 133660 ||| Sbjct 1564480 CAT 1564478 >seq2 Length=4278185 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 149555 GGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCG 149614 ||||||| ||||| ||||||||||| | || | | ||| | ||| | | Sbjct 517526 GGTGGGGGAAGCGTGAGTAAAATATTTTTCTGACAATAGATTGTAAGTCTCAATAGCTTT 517585 Query 149615 GTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTC 149674 ||| || ||||||||||| || || | ||||||||||| | | ||||||||||| || Sbjct 517586 GTCGATATCATCGCCATGAATACCAACTGCGACGCGCATTAATAAATGCTGCGGTCTTTC 517645 Query 149675 CGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTA 149734 |||||||| |||||| |||||||| | || || || ||| | ||||| || Sbjct 517646 AACCACTTTGCCATTAATTTTCAGCAAGTAACTTCGCTCCAGGGTTTTGAATCCAAAATA 517705 Query 149735 CTTGTAGTCAAAGTCGCG 149752 || |||| ||||| || Sbjct 517706 GTTATAGTTGAAGTCTCG 517723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417645679280