Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq223 129 4e-25 >seq223 Length=3708094 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | || | |||||||| || || ||||| || |||||||| ||||| Sbjct 241641 ACCACCTCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGA 241582 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| ||||| |||||||| || | |||||| || ||| |||| Sbjct 241581 CAGGGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGG 241522 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| |||||| |||| |||| || | |||||| || ||| | Sbjct 241521 AATTCCTTCTTTGTCCTGAATTTTAGCTTTC-ACATTTTCAATGGTGTCCGATGCTTCAA 241463 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| || |||| ||||| || ||||| |||||| Sbjct 241462 CTTCCAGGGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCATA 241413 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || ||| || ||||| |||||||| || || || ||||| |||| || Sbjct 238684 CACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCTTC 238625 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 |||||||||||| ||||||||||| | ||||||||| | || | || |||||||| Sbjct 238624 CAATTGTTTTCCTGCAAAAATCAACCTCTGCTGATCCGGAGGGATTCCCTCTTTGTCCTG 238565 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || || | || | || | ||||||| | || || || | |||||||||| Sbjct 238564 GATCTT-TGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATCGTTT 238506 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| |||||||||||||| Sbjct 238505 TCCCCGTGAGGGTTTTCACAAAGATCTGCAT 238475 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 || ||||| | ||| || ||||| |||||||||||||| | ||||| | || || Sbjct 239823 ACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCGCCCATCTTCT 239764 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | |||||| || ||||||||||| | |||||| ||| | || | || |||||||| | Sbjct 239763 AGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCTTGA 239704 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | |||| || | ||||||| | ||| || || | ||||| || || Sbjct 239703 ATCTT-TGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTCTT 239645 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| ||||| || || ||||| ||||||||| Sbjct 239644 ACCGGTTAAAGTCTTCACAAAAATCTGCATA 239614 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || ||||| || ||||| || ||||| ||||| | ||||| | || ||| Sbjct 240051 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTGCGACCATCTTCC 239992 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 || ||||| |||||||| ||||| | || |||||| | || | ||||||||||| Sbjct 239991 AACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGG 239932 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| || || || | || | ||||||| | || || || | ||||| || || Sbjct 239931 ATTTT-TGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCTT 239873 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| ||||||||||| ||||| || |||||| Sbjct 239872 ACCAGTTAACGTTTTCACAAAAATTTGCATA 239842 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || ||| || || || || ||||| || || | ||||| | || ||| Sbjct 239139 ACCAAGTGCAGCGTGGATTCCTTCTGAATATTGTAGTCCGACAACGTGCGACCATCCTCC 239080 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| |||||||| || | ||||||||||||| |||| | ||||||||||| | Sbjct 239079 AGCTGTTTGCCGGCAAAGATAAGACGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGA 239020 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| |||| |||| || | ||||| | || || || | || || ||||| Sbjct 239019 ATTTTAGCTTTC-ACATTTTCGATCGTGTCAGAGGCCTCTACTTCCAGAGTAATAGTTTT 238961 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || || || ||||||||||| Sbjct 238960 GCCCGTCAATGTCTTAACGAAGATCTGCAT 238931 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || ||||| || |||||||| |||||||| ||||| | || ||| Sbjct 241166 ACCAAGTGAAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 241107 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||| ||||||||||| |||| | |||||| ||| | || | || || ||||| Sbjct 241106 AATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGG 241047 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || ||| |||| || | || || || ||| || || | ||||| ||||| Sbjct 241046 ATCTTAGCCTTC-ACATTCTCGATAGTATCAGATGCTTCGACTTCCAGGGTGATGGTTTT 240988 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | || || |||||||| |||||| Sbjct 240987 GCCGGTCAGAGTCTTGACAAAGATTTGCATA 240957 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||||| || ||| ||||| || |||||||| || || Sbjct 238929 CCACCGCGGAGACGGAGGACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAA 238870 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||||||| ||||||||||| |||| | |||||| ||| | || Sbjct 238869 AGGGTGCGGCCATCTTCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGG 238810 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | |||| || | || ||| | ||| || Sbjct 238809 ATTCCCTCCTTGTCCTGGATCTT-AGCCTTGACATTTTCGATCGTATCGGAAGCTTCGAC 238751 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || ||||| ||||||||||| Sbjct 238750 ATCGAGAGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATCTGCAT 238703 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || ||||| || ||||| |||||||| ||||| Sbjct 239385 CCACCACGTAGACGAAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 239326 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || ||||||||||| |||||||| || | |||||| |||||| | || Sbjct 239325 AAGGTACGGCCATCCTCCAATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTGGG 239266 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| |||||| | | |||| || | || ||| | ||| || Sbjct 239265 ATTCCTTCTTTGTCCTGAATTTT-AGCCTTGACATTTTCAATAGTATCGGAGGCTTCGAC 239207 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || || || || || || ||||| || || ||||| Sbjct 239206 TTCCAAGGTAATTGTCTTTCCGGTCAAGGTCTTTACGAATATTTGCAT 239159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328701908826240