Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq223 127 5e-24 >seq223 Length=3708094 Score = 127 bits (140), Expect = 5e-24 Identities = 146/195 (75%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| || || || ||||| ||||| |||||||| || || ||||| | Sbjct 239395 TTTTGTCAAAACTCTTACCGGTAAAACAATCACCTTGGAAGTCGAGGCCTCCGACACCAT 239454 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 ||| || ||| ||||||||| || |||||||| || || ||| |||||| | Sbjct 239455 TGAAAACGTTAAGGCAAAGATTCAGGATAAAGAAGGCATCCCCCCAGACCAACAAAGATT 239514 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || |||||||| || |||||||||||||| | || ||| | || ||||| ||||||| Sbjct 239515 AATTTTCGCCGGCAAACAGTTGGAAGATGGTCGCACCTTGTCTGACTACAATATCCAGAA 239574 Query 206358 AGAGTCTACTCTTCA 206372 || ||||||||||| Sbjct 239575 GGAATCTACTCTTCA 239589 Score = 122 bits (134), Expect = 2e-22 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||| | || || || || ||||| |||||||| || || ||||| ||||| Sbjct 239858 AAAACGTTAACTGGTAAGACCATCACCTTGGAAGTCGAGGCCTCCGACACCATCGAAAAC 239917 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||||||| || || || |||||||||||| || || |||||| | ||||| Sbjct 239918 GTCAAAGCAAAA-ATCCAGGACAAAGAAGGAATTCCCCCAGATCAACAAAGATTGATCTT 239976 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || |||||||||||||| | || ||| |||| ||||| | || || || || Sbjct 239977 TGCCGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAATATTCAAAAGGAATC 240036 Query 206364 TACTCTTCACCTTGTT 206379 |||||||||| | ||| Sbjct 240037 TACTCTTCACTTGGTT 240052 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || || || || ||||| ||||| ||||||| ||| ||||| Sbjct 240961 CAAATCTTTGTCAAGACTCTGACCGGCAAAACCATCACCCTGGAAGTCGAAGCATCTGAT 241020 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || ||||| || ||| || Sbjct 241021 ACTATCGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAGCAG 241080 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||| ||||| ||||||||||| ||||||||||| | || | |||| |||||| || Sbjct 241081 AGACTGATCTTTGCCGGAAAGCAATTGGAAGATGGCCGCACCCTCTCCGACTACAACATC 241140 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||||||| || || |||||| | ||| Sbjct 241141 CAGAAAGAATCGACCCTTCACTTGGTT 241167 Score = 113 bits (124), Expect = 1e-19 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| || || || ||||| ||||| ||||||| ||| || ||||| | ||| Sbjct 241428 CAAAACCCTAACTGGCAAAACCATCACCCTGGAAGTTGAAGCATCGGACACCATTGAAAA 241487 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| ||||| || |||||||||||| ||| ||| || | || |||| Sbjct 241488 TGTGAAAGCTAAA-ATTCAGGACAAAGAAGGAATTCCGCCAGACCAACAGCGTCTCATCT 241546 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | ||||| || ||| |||| ||||| | || || |||| |||||| |||||||||| | Sbjct 241547 TTGCCGGCAAACAGCTGGAGGATGGTCGCACCCTGTCCGACTACAACATCCAGAAAGAAT 241606 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCGA 206391 | || || || | ||| || | || ||| Sbjct 241607 CAACCCTCCATTTGGTTCTGCGGCTCCGA 241635 Score = 109 bits (120), Expect = 1e-18 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || ||||| ||||| |||| || ||| || ||||| |||| || |||||| Sbjct 241210 ACCGGTAAAACCATCACCCTGGAGGTTGAAGCATCCGACACCATCGAGAACGTGAAAGCA 241269 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 || ||| || || || || ||||| || ||| |||||| | |||||||||||||| Sbjct 241270 AA-GATCCAGGACAAGGAGGGAATCCCACCAGACCAGCAAAGATTGATCTTCGCCGGAAA 241328 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| ||||||||||| | || ||| | || |||||| | ||||| || || || || || Sbjct 241329 GCAATTGGAAGATGGGCGTACCTTGTCGGACTACAACATTCAGAAGGAATCCACACTCCA 241388 Query 206373 CCTTGTTTTGAGACTTCGA 206391 ||||| | ||||| ||| Sbjct 241389 TCTTGTCCTCAGACTGCGA 241407 Score = 107 bits (118), Expect = 5e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || || || ||||| |||||||| ||| ||||||||| | || Sbjct 240086 AAAACTTTAACTGGTAAGACCATCACCTTGGAAGTCGAAGCTTCTGACACCATTGAGAAT 240145 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || ||||||||||| || ||| |||||| | |||||| Sbjct 240146 GTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCCCCAGACCAACAAAGATTAATCTTC 240205 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || |||||||||||||| | || ||| |||| || ||| | ||||| || || Sbjct 240206 GCGGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAACATTCAGAAGGAATCC 240265 Query 206365 AC 206366 || Sbjct 240266 AC 240267 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || ||||| || ||| ||||||| || |||||||| ||||| || ||||| Sbjct 238955 ACGGGCAAAACTATTACTCTGGAAGTAGAGGCCTCTGACACGATCGAAAATGTGAAAGCT 239014 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| ||||| || ||||||||||| ||| || || | |||||||| ||||| || Sbjct 239015 AAA-ATTCAGGACAAAGAAGGAATCCCGCCAGATCAGCAGCGTCTTATCTTTGCCGGCAA 239073 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 ||| |||| ||||| | || ||| | || ||||| | ||||| || || || || || Sbjct 239074 ACAGCTGGAGGATGGTCGCACGTTGTCGGACTACAATATTCAGAAGGAATCCACGCTGCA 239133 Query 206373 CCTTGTTTTGAGACTTCG 206390 | | ||| | ||||||| Sbjct 239134 CTTGGTTCTTCGACTTCG 239151 Score = 93.3 bits (102), Expect = 1e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||| | || || ||| ||| || || ||||| || ||| Sbjct 238727 ACCGGCAAGACCATCACTCTCGATGTCGAAGCTTCCGATACGATCGAAAATGTCAAGGCT 238786 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || ||||| || ||| || ||||| ||||| ||||||||| Sbjct 238787 AAGATCCAGGACAAGGAGGGAATCCCACCAGACCAGCAGAGACTGATCTTTGCCGGAAAG 238846 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 || ||||||||||| | || | | || |||||| |||||||||| || || ||||| Sbjct 238847 CAATTGGAAGATGGCCGCACCCTTTCGGACTACAACATCCAGAAAGAATCCACCCTTCA 238905 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || ||||| || || || |||||||| ||| || || || | ||| || ||| Sbjct 239183 ACCGGAAAGACAATTACCTTGGAAGTCGAAGCCTCCGATACTATTGAAAATGTCAAGGCT 239242 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || ||||| || ||||||||||| || || || | |||||||| ||||| || Sbjct 239243 AAAATTCAGGACAAAGAAGGAATCCCACCAGATCAACAGCGTCTTATCTTTGCCGGTAAA 239302 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||| ||||| | || ||| |||| |||||| |||| || || |||||||| ||| Sbjct 239303 CAATTGGAGGATGGCCGTACCTTGTCCGACTACAACATCCAAAAGGAATCTACTCTCCAC 239362 Query 206374 CTTGTT 206379 | ||| Sbjct 239363 TTGGTT 239368 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | || || || || ||||| |||||||| ||| || ||| Sbjct 239618 CAGATTTTTGTGAAGACTTTAACCGGTAAGACTATCACCTTGGAAGTCGAAGCCTCCGAC 239677 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| |||||||||||| ||||| |||||| || ||| || Sbjct 239678 ACCATCGAAAATGTGAAGGCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCAGCAG 239737 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||| | || || || || || || | |||||||| | || ||| ||||||||||| | Sbjct 239738 AGATTGATTTTTGCTGGCAAACAACTAGAAGATGGGCGCACCTTGTCCGATTACAACATT 239797 Query 206353 CAGAAAGAGTCTAC 206366 || || || || || Sbjct 239798 CAAAAGGAATCCAC 239811 Score = 93.3 bits (102), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | || || ||||| ||||| ||||||| ||| || ||| Sbjct 240733 CAGATTTTTGTCAAAACTTTGACCGGTAAAACCATCACCCTGGAAGTTGAAGCATCCGAC 240792 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | || || ||||| || ||| || || ||||| || ||| || ||| || Sbjct 240793 ACCATTGAGAACGTGAAAGCGAA-GATCCAGGACAAAGAGGGGATTCCACCAGACCAACA 240851 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | || |||||||| ||||||||||||||||| | || ||| |||| || || | Sbjct 240852 GCGATTAATTTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACCTTGTCCGACTATAATAT 240911 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 || || || ||||| || ||| | ||| Sbjct 240912 TCAAAAGGAATCTACCCTCCACTTGGTT 240939 Score = 87.8 bits (96), Expect = 4e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||| || ||||||||||| | || || || ||| ||| Sbjct 238478 CAGATCTTTGTGAAAACCCTCACGGGGAAAACGATCACCCTCGAGGTTGAGGCTTCCGAC 238537 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || ||||| ||||| ||||| || Sbjct 238538 ACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGAATCCCTCCGGATCAGCAG 238597 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || || || ||||| || |||||||| || | || | | || |||||| || Sbjct 238598 AGGTTGATTTTTGCAGGAAAACAATTGGAAGACGGCCGCACCCTTTCGGACTACAACATC 238657 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || || || |||||| | || | |||||||| Sbjct 238658 CAAAAGGAATCCACCCTTCACTTGGTGCTCAGACTTCG 238695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181812895834762