Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq223 131 2e-25 seq2 98.7 9e-16 >seq223 Length=3708094 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||||||| | | |||| ||||| || |||||||||||| || ||| || | Sbjct 241628 CGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA 241569 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || |||||||| |||| | |||| ||||||||||| ||||| || || |||||||| Sbjct 241568 TCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGAATTCCTTCTTTG 241509 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||||| | ||| | || || | | || ||||| | || | Sbjct 241508 TCCTGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAACTTCCAGGGTGATG 241449 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || ||||| | ||| || ||||| Sbjct 241448 GTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 Score = 116 bits (128), Expect = 4e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | || || ||||| |||||||||||| || |||||| ||| || Sbjct 239368 AACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTC 239309 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | |||||||||| | |||| ||||||||||||||||| || || |||||||| || Sbjct 239308 CAATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCTTTGTCCTG 239249 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| || | | ||| | |||||||| | || ||||| | || | || || Sbjct 239248 AATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGACTTCCAAGGTAATTGTCTT 239189 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || |||| || |||| ||| || |||||| || Sbjct 239188 TCCGGTCAAGGTCTTTACGAATATTTGCATGCCT 239155 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | || || |||||||| ||||||||| || ||| || |||||| Sbjct 240052 AACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTGCGACCATCTTC 239993 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||||||||| | |||| | | ||||||||||| || || |||||||| || Sbjct 239992 CAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTG 239933 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | ||| | || |||| | ||| ||||| | || | || || Sbjct 239932 GATTTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCTT 239873 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| | ||||| | ||||| ||||| Sbjct 239872 ACCAGTTAACGTTTTCACAAAAATTTGCAT 239843 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||| ||||| | | || || || || || |||||||| || ||| Sbjct 239608 ACGCAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCAGACAAGGT 239549 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | |||||| |||| | |||| | ||||| ||||| || ||||| Sbjct 239548 GCGACCATCTTCCAACTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGGGGGATGCC 239489 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||||||| ||| ||| || | | ||| | || |||| | ||| ||||| | Sbjct 239488 TTCTTTATCCTGAATCTTTGCCTTAACGTTTTCAATGGTGTCGGAGGCCTCGACTTCCAA 239429 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | |||||||| || |||||||| | ||||| ||||| Sbjct 239428 GGTGATTGTTTTACCGGTAAGAGTTTTGACAAAAATTTGCAT 239387 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 |||||| || | | | || || |||||||| || |||||| || ||| || |||||| Sbjct 240939 AACCAAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCGGACAAGGTGCGACCATCTTC 240880 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||| ||||||| | |||| |||||||| ||||| || || || ||||| || Sbjct 240879 CAACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTGGAATCCCCTCTTTGTCCTG 240820 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || ||||| | || | || |||| | || ||||| | || | ||||| Sbjct 240819 GATCTTCGCTTTCACGTTCTCAATGGTGTCGGATGCTTCAACTTCCAGGGTGATGGTTTT 240760 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| |||| |||||| | ||||||||||| Sbjct 240759 ACCGGTCAAAGTTTTGACAAAAATCTGCAT 240730 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | | || || || |||||||| |||||| || ||| || |||||| Sbjct 240280 AACCAAATGCAAGGTGGATTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCTTC 240221 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||||||| | |||||| | ||||| ||||| || || ||||||||||| Sbjct 240220 CAACTGTTTACCCGCGAAGATTAATCTTTGTTGGTCTGGGGGGATTCCTTCTTTATCCTG 240161 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| || |||| | || | || || | | || ||||| | || | || || Sbjct 240160 AATCTTCGCCTTCACATTCTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATGGTCTT 240101 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| | |||||| | ||||| ||||| Sbjct 240100 ACCAGTTAAAGTTTTCACAAAAATTTGCAT 240071 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| ||||| | | | || || |||||||||||||| ||| || ||| ||| |||||| Sbjct 239824 AACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCGCCCATCTTC 239765 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 || ||||| || | | | || | | ||| || ||||| || || || ||||| || Sbjct 239764 TAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCTTG 239705 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||| ||| |||| | ||| | || |||| | || ||||| | || | || || Sbjct 239704 AATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTCTT 239645 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| || | ||| || | ||||||||||| Sbjct 239644 ACCGGTTAAAGTCTTCACAAAAATCTGCAT 239615 >seq2 Length=4278185 Score = 98.7 bits (108), Expect = 9e-16 Identities = 191/279 (68%), Gaps = 5/279 (2%) Strand=Plus/Plus Query 147343 ATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATT 147402 || ||||||| |||| ||| || || ||||| | |||| | |||| ||| || | | Sbjct 516385 ATTGGATAGTAGTTGATATCGATGATTTTGTTCAAGTTATATGCAACAATTTTGGTCACT 516444 Query 147403 GTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGA-CACGTACGCATTGGTTCACGGC 147461 ||| ||||| | ||||| || ||| ||| | ||| || || ||| || || Sbjct 516445 TCTTTTAGTTTTTTGAAATTGTAGGTCTTATCTGGGTTCACAAAC--AT--GTTGACAGC 516500 Query 147462 GATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGC 147521 || || || |||||||| || || | || |||| | | || | || ||||||| Sbjct 516501 AATCGATGCAAGATTGCAAACCGCGATTTCATCGGGGCTGGAATATTCTACAATTTCGGT 516560 Query 147522 GCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGC 147581 || |||||||||||||| || ||| | ||| ||||||||| ||| ||||| || Sbjct 516561 ACAAAGGTTGCTGCATTTAATAGTTCCAACATTCTGCTGATTGGATTTGCGATTACAGTG 516620 Query 147582 GTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTG 147620 ||||| | |||||||| ||| |||||||| || || Sbjct 516621 ATCTTTATACAGCATGTAAGGTGTTCCGGTCTCAACCTG 516659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476608090111920