Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq223 127 2e-24 seq2 82.4 7e-11 >seq223 Length=3708094 Score = 127 bits (140), Expect = 2e-24 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || |||||||| || | ||||| | |||||||||||| | Sbjct 239615 ATGCAGATTTTTGTGAAGACTTTAACCGGTAAGACTATCACCTTGGAAGTCGAAGCCTCC 239674 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || ||| ||| || |||||||| || || || || ||| Sbjct 239675 GACACCATCGAAAATGTGAAGGCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCAG 239734 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 || ||| | |||| | ||||||||||| ||||||| | | |||| |||||||| Sbjct 239735 CAGAGATTGATTTTTGCTGGCAAACAACTAGAAGATGGGCGCACCTTGTC--CGATTACA 239792 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | |||||||| ||||||||| | |||||||| Sbjct 239793 ACATTCAAAAGGAATCCACCTTGCATTTAGT 239823 Score = 109 bits (120), Expect = 5e-19 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| ||||| || || | ||||| | |||||||| ||| | Sbjct 239843 ATGCAAATTTTTGTGAAAACGTTAACTGGTAAGACCATCACCTTGGAAGTCGAGGCCTCC 239902 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| |||||| || ||||| || || || || ||||| Sbjct 239903 GACACCATCGAAAACGTCAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAA 239962 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 |||||| | || | | ||| ||||| | ||||||| | | | |||| ||| |||| Sbjct 239963 CAAAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGTCGCACCTTGTC--CGACTACA 240020 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||| ||||| || |||| || || Sbjct 240021 ATATTCAAAAGGAATCTACTCTTCACTTGGT 240051 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || | ||||| ||| | ||||| | ||||||||||| Sbjct 240958 ATGCAAATCTTTGTCAAGACTCTGACCGGCAAAACCATCACCCTGGAAGTCGAAGCATCT 241017 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||||||| | || || || || || || ||||| || || || || ||| Sbjct 241018 GATACTATCGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 241077 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||||| || | | ||| || ||| | ||||||| | | || ||| ||||| Sbjct 241078 CAGAGACTGATCTTTGCCGGAAAGCAATTGGAAGATGGCCGCACCCTCTCCGACTACAAC 241137 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || |||||||| ||| |||| || || Sbjct 241138 ATCCAGAAAGAATCGACCCTTCACTTGGT 241166 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| ||||| || || | ||||| | ||||||||||| Sbjct 240071 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAGACCATCACCTTGGAAGTCGAAGCTTCT 240130 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || || ||| |||||||| || || || || || || Sbjct 240131 GACACCATTGAGAATGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCCCCAGACCAA 240190 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 |||||| | || | || || ||||| | ||||||| | | | |||| ||| || | Sbjct 240191 CAAAGATTAATCTTCGCGGGTAAACAGTTGGAAGATGGTCGCACCTTGTC--CGACTATA 240248 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | ||||| || ||||||||| | ||||| || Sbjct 240249 ACATTCAGAAGGAATCCACCTTGCATTTGGT 240279 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || ||||| ||| | ||||| | ||||| ||||| | Sbjct 240730 ATGCAGATTTTTGTCAAAACTTTGACCGGTAAAACCATCACCCTGGAAGTTGAAGCATCC 240789 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || ||| || || || |||||||| || || || || || Sbjct 240790 GACACCATTGAGAACGTGAAAGCGAAGATCCAGGACAAAGAGGGGATTCCACCAGACCAA 240849 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || || | |||| || ||| || || | ||||||| | | | |||| ||| || | Sbjct 240850 CAGCGATTAATTTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACCTTGTC--CGACTATA 240907 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||||| ||||| ||| | || || || Sbjct 240908 ATATTCAAAAGGAATCTACCCTCCACTTGGT 240938 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || ||||| || || ||||| || | ||||| |||| |||||||| Sbjct 238702 CATGCAGATCTTCGTAAAGACTTTGACCGGCAAGACCATCACTCTCGATGTCGAAGCTTC 238761 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| ||||| | || || || || || || ||||| || || || || || Sbjct 238762 CGATACGATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCACCAGACCA 238821 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| ||||| || | | ||| || ||| | ||||||| | | | || ||||| Sbjct 238822 GCAGAGACTGATCTTTGCCGGAAAGCAATTGGAAGATGGCCGCACCCTTTCGGACTACAA 238881 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || || |||||||||||| ||||||| || Sbjct 238882 CATCCAGAAAGAATCCACCCTTCATTTGGT 238911 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || ||||| || || |||||||| | || || | |||||||||||| Sbjct 239158 CATGCAAATATTCGTAAAGACCTTGACCGGAAAGACAATTACCTTGGAAGTCGAAGCCTC 239217 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||| || | || || |||||| || ||||| || || || || ||||| Sbjct 239218 CGATACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAAGAAGGAATCCCACCAGATCA 239277 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 || | || || | | ||| |||||| | || |||| | | |||| ||| ||| Sbjct 239278 ACAGCGTCTTATCTTTGCCGGTAAACAATTGGAGGATGGCCGTACCTTGTC--CGACTAC 239335 Query 25352 AATATTCAAAAAGAATCCAC 25371 || || ||||| ||||| || Sbjct 239336 AACATCCAAAAGGAATCTAC 239355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || ||||| || || ||| | || || | ||||| || ||| Sbjct 238931 ATGCAGATCTTCGTTAAGACATTGACGGGCAAAACTATTACTCTGGAAGTAGAGGCCTCT 238990 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| |||||| || ||||| || || ||||| |||||| Sbjct 238991 GACACGATCGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCGCCAGATCAG 239050 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || | || || | | ||||||||| || || |||| | | | |||| | | |||| Sbjct 239051 CAGCGTCTTATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACGTTGTCGG--ACTACA 239108 Query 25353 ATATTCAAAAAGAATCCAC 25371 ||||||| || |||||||| Sbjct 239109 ATATTCAGAAGGAATCCAC 239127 >seq2 Length=4278185 Score = 82.4 bits (90), Expect = 7e-11 Identities = 218/327 (67%), Gaps = 11/327 (3%) Strand=Plus/Plus Query 137389 ATACCGATAGGTCTGTGTTTAAAATTTGATATTTGAGCGCTAACAAGCGGATAAAAGTTT 137448 |||||||||||||| ||| | | ||| ||| ||| || || ||||| |||| Sbjct 516340 ATACCGATAGGTCTATGTCTCATATTGGATCTTTCGGCTTCTGGAATTGGATAGTAGTTG 516399 Query 137449 GCGTCTATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCG 137508 || || ||| | || | || | | ||| | | ||| ||||| | || || | Sbjct 516400 ATATCGATGATTTTGTTCAAGTTATATGCAACAATTTTGGTCACTTCTTTTAGTTTTTTG 516459 Query 137509 AAATCGAAGCTTTTAGACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTG 137568 |||| | || | ||| ||| ||| |||| | ||||| ||||| || || | ||| Sbjct 516460 AAATTGTAGGTCTTAT-CTGG--GTTCACAAACATGTTGACAGCAATCGATGCAAGATTG 516516 Query 137569 CATACGGCCGTTTCTGTATTGTCGCTG---TATTGTACAATTTCGGCGCAAAGATTGCTG 137625 || || || |||| || | |||| |||| ||||||||||| ||||| |||||| Sbjct 516517 CAAACCGCGATTTC---ATCGGGGCTGGAATATTCTACAATTTCGGTACAAAGGTTGCTG 516573 Query 137626 TTTCGGATCACTCCCAAATTCTTTTGATTGTTTTTCTCGTTGAC-GTGATCTTTATATAT 137684 | || ||| | ||||| |||||| ||| || | || |||||||||||| | Sbjct 516574 CATTTAATAGTTCCAACATTCTGCTGATTGGATTT-GCGATTACAGTGATCTTTATACAG 516632 Query 137685 CATATACGGAGTTCCGGTTTCGACTTG 137711 ||| || || |||||||| || || || Sbjct 516633 CATGTAAGGTGTTCCGGTCTCAACCTG 516659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445091495759040