Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq223 138 1e-27 seq496 91.5 1e-13 >seq223 Length=3708094 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 || ||||| || || |||||||||||||||||||||| |||||| ||| | || || Sbjct 239823 ACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCGCCCATCTTCT 239764 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 || || || || ||||| ||||| | ||||||||| | |||| | ||| ||||| Sbjct 239763 AGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCTTGA 239704 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 |||||| ||||| | || | | |||||| | ||| || |||| ||||| || ||| Sbjct 239703 ATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTCTTA 239644 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || ||||| |||||||| |||||||| Sbjct 239643 CCGGTTAAAGTCTTCACAAAAATCTGCAT 239615 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| ||||||||||| || || |||| |||||| || | || ||| Sbjct 240938 ACCAAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCGGACAAGGTGCGACCATCTTCC 240879 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | ||||||||| || || || || ||||| ||||| | |||| | ||| |||||| | Sbjct 240878 AACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTGGAATCCCCTCTTTGTCCTGG 240819 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| |||| | | | |||||| | ||| || |||| ||||| |||||| Sbjct 240818 ATCTTCGCTTTCACGTTCTCAATGGTGTCGGATGCTTCAACTTCCAGGGTGATGGTTTTA 240759 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||||||||| ||||| |||||||| Sbjct 240758 CCGGTCAAAGTTTTGACAAAAATCTGCAT 240730 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||| |||||||| || | | ||| || |||| |||| || || || ||||| Sbjct 238665 TCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCTTCCAATTGTTTTCCTGCAAAA 238606 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| |||||| |||| ||| | | ||| |||||| ||||||| ||| | | Sbjct 238605 ATCAACCTCTGCTGATCCGGAGGGATTCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTC 238546 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| | || ||||| | ||||||||||| ||||| | ||||||||| Sbjct 238545 TCAATGGTGTCGGAAGCCTCAACCTCGAGGGTGATCGTTTTCCCCGTGAGGGTTTTCACA 238486 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 238485 AAGATCTGCAT 238475 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| || | |||||| ||| | || |||| ||||| || || || Sbjct 241376 TCCTTCTGAATGTTGTAGTCCGACAAGGTACGCCCATCTTCCAATTGCTTTCCGGCGAAG 241317 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| | |||||||| | || | | |||||||||| ||||||| |||| | Sbjct 241316 ATCAATCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATCTTTGCTTTCACGTTC 241257 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| | ||| ||||||| ||||| |||||||| |||||||| || || Sbjct 241256 TCGATGGTGTCGGATGCTTCAACCTCCAGGGTGATGGTTTTACCGGTCAAAGTCTTTACG 241197 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 241196 AAGATTTGCAT 241186 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| ||||||||||| ||||| |||| |||||| || | || ||| Sbjct 240051 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTGCGACCATCTTCC 239992 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | ||| ||||| ||||| ||||| | || || || | |||| | || |||||| | Sbjct 239991 AACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGG 239932 Query 35648 ATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 || |||||||| ||| | | |||||| | || || |||| ||||| || || Sbjct 239931 AT-TTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCTT 239873 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| || || ||||||||||| || ||||| Sbjct 239872 ACCAGTTAACGTTTTCACAAAAATTTGCAT 239843 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| || || ||||| |||||||| || |||| |||||| || | || ||| Sbjct 240279 ACCAAATGCAAGGTGGATTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCTTCC 240220 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | ||| |||||||| || || || | || ||||| | || | | || || ||| Sbjct 240219 AACTGTTTACCCGCGAAGATTAATCTTTGTTGGTCTGGGGGGATTCCTTCTTTATCCTGA 240160 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTA 35707 ||||| ||||| | | | | ||||| | ||| || |||| ||||| || ||| Sbjct 240159 ATCTTCGCCTTCACATTCTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATGGTCTTA 240100 Query 35708 CCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || |||||||||||||| || ||||| Sbjct 240099 CCAGTTAAAGTTTTCACAAAAATTTGCAT 240071 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||||| | | ||||| || | ||| |||||||| |||||||| |||| Sbjct 239387 TTCCACCACGTAGACGAAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGG 239328 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 |||||| || | || |||| || ||||| ||||| || | ||||| || || | | Sbjct 239327 ACAAGGTACGGCCATCCTCCAATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTG 239268 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 | | | || |||||| ||| ||| | ||| | | || | | || ||| | ||| Sbjct 239267 GGATTCCTTCTTTGTCC-TGAATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCG 239209 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| || || || || || ||||| || || || ||||| ||||| Sbjct 239208 ACTTCCAAGGTAATTGTCTTTCCGGTCAAGGTCTTTACGAATATTTGCAT 239159 >seq496 Length=1672140 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || || ||||| || | | || || | || || || || ||||| ||||| | Sbjct 1564667 CCTTCTGGATATTGTAGTCAGAGAGAGTACGACCATCTTCTAGTTGTTTACCAGCAAAGA 1564608 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| | |||||| || | |||| | ||||||||| |||||| ||| | | || Sbjct 1564607 TCAATCTCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTTT 1564548 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | || ||| | |||||||| | ||||| ||||||||||||| || ||||| | Sbjct 1564547 CAATAGTATCGGAAGCCTCCACCTCAAGGGTGATGGTTTTACCCGTCAGGGTCTTCACGA 1564488 Query 35727 ATATCTGCAT 35736 | |||||||| Sbjct 1564487 AGATCTGCAT 1564478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450790658571760