Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2 127 3e-24 seq142 109 8e-19 >seq2 Length=4278185 Score = 127 bits (140), Expect = 3e-24 Identities = 232/334 (69%), Gaps = 7/334 (2%) Strand=Plus/Plus Query 69115 ATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTA 69174 ||||||||||||||||||||| |||| || ||||| ||||||||||| ||||| || || Sbjct 516340 ATACCGATAGGTCTATGTCTCATATTGGATCTTTCGGCTTCTGGAATTGGATAGTAGTTG 516399 Query 69175 ATATCTATAATTTTATT-AAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAG 69233 ||||| || ||||| || ||| | | | | || | ||| ||| || |||||||| Sbjct 516400 ATATCGATGATTTTGTTCAAGTTATATG-CAACAATTTTGGTCACTTCTTTTAGTTTTTT 516458 Query 69234 AAAATCAAATCGTC-CATCT---ATAACAAACATATTCAGTGCTACAGATGCTAGATTAC 69289 |||| | ||| |||| | |||||||| || | || | ||||| ||||| | Sbjct 516459 GAAATTGTA-GGTCTTATCTGGGTTCACAAACATGTTGACAGCAATCGATGCAAGATTGC 516517 Query 69290 AAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATT 69349 |||| || | |||| | | | ||||| || || || ||||| || || || |||| Sbjct 516518 AAACCGCGATTTCATCGGGGCTGGAATATTCTACAATTTCGGTACAAAGGTTGCTGCATT 516577 Query 69350 TGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAA 69409 | ||||| || | ||| |||||||| || |||||| || || || || || Sbjct 516578 TAATAGTTCCAACATTCTGCTGATTGGATTTGCGATTACAGTGATCTTTATACAGCATGT 516637 Query 69410 ACGGAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 | || || || || |||| ||| || | ||||| Sbjct 516638 AAGGTGTTCCGGTCTCAACCTGTGAGTTTATAAT 516671 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 70009 GTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGAT 70068 || || || |||||||| || ||||||| || | |||||||| || ||||||||| Sbjct 517527 GTGGGGGAAGCGTGAGTAAAATATTTTTCTGACAATAGATTGTAAGTCTCAATAGCTTTG 517586 Query 70069 TCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 || ||||| |||||| || | ||||| ||||| || | |||||| |||| ||| Sbjct 517587 TCGATATCATCGCCATGAATACCAACTGCGACGCGCATTAATAAATGCTGCGGTCTTTCA 517646 Query 70129 ACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAG 70188 ||| ||| ||| ||||||| || ||| | ||||| ||||| || ||||||||| Sbjct 517647 ACCACTTTGCCATTAATTTTCAGCAAGTAACTTCGCTCCAGGGTTTTGAATCCAAAATAG 517706 Query 70189 TTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATT 70226 || || ||||||| || |||||||| |||| || Sbjct 517707 TTATAGTTGAAGTCTCGATCATAAATAATGGCAGAGTT 517744 Score = 116 bits (128), Expect = 5e-21 Identities = 198/287 (69%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 68644 ATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGA 68703 |||||| ||| || || || |||| ||| | | ||| | || | | || | || | | Sbjct 515705 ATAATTTCATTTTTCATTTCTTCATCCCAGAGATCTCTTGCTGTGAGATCTGTTAGCAAA 515764 Query 68704 TGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTA 68763 || || || | || || ||||| ||||| | || | | || || | ||| ||||| Sbjct 515765 TGTGGGTTCATGATCTGGAATTCGCCAGAGAGGACACGCCTTGTATAGACATTGCTGGTG 515824 Query 68764 TATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGT 68823 || | || | |||||||| || ||||||||||| || || || ||||||||||| ||| Sbjct 515825 TAAGCCTCGATCGATTCATTGTTACCCAGAATTTGCGCTGTAGAGGCAGTTGGCATTGGT 515884 Query 68824 GCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAA 68883 || | | |||| |||| | |||||| | |||||| | ||||| | ||| Sbjct 515885 GCAATAAGTAAAGAGTTTCGGATTCCATGTTTAGCTATTTTAGCCTTTAGTGCTGCCCAG 515944 Query 68884 TCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 ||||||||||| | || ||| ||||| | ||| ||||||||||| Sbjct 515945 TCCCAAAGATCTGTCGGCGTAACGTTCCACATATCATATTGTAGAAT 515991 Score = 104 bits (114), Expect = 3e-17 Identities = 118/157 (75%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 70336 CTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATA 70395 ||||| | ||||||||| |||||||| | ||| |||| ||||| || || ||||||||| Sbjct 517944 CTAAACAATTTTTTTGTCTCCTTGTGGAGATTAGATACAGCTATCCTTGCAGCTAGAATA 518003 Query 70396 GCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAAT 70455 ||||| || | ||||| ||| || || || || |||| |||||||| |||| || Sbjct 518004 GCATAATCGGCATGTTTTGTTGTCATTGTGGCAGCAGTTTCTGCAGCTAAATTATCCAAC 518063 Query 70456 TCTATAGTTGTAACTCCGTTATATAG-CCCTTGAATA 70491 || | ||||| |||||| | || || || |||| || Sbjct 518064 TCAACCGTTGTCACTCCGCTGTAAAGACCGTTGATTA 518100 >seq142 Length=137952 Score = 109 bits (120), Expect = 8e-19 Identities = 139/191 (73%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || || || |||||||| || || || || || ||||| ||||||||||||||| || Sbjct 57423 AAAGTTAGCCCAGGCATAAGTCCGCGTTTCTTCAGCCAGAATATGGCAGCAAAACTACCG 57364 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TA 39784 || ||||| ||||||||||||||||| || || | || |||||| || ||| || Sbjct 57363 CTGAAAAAGATTCCTTCTACTGCTGCAAAGGCCACGACTCGCTCTCCAAAATTTGCACTA 57304 Query 39785 TCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 |||| || ||||| || |||||| | |||||| || |||||||| | | || Sbjct 57303 TCATGATTGATCCAATTTATTGCCCAGTTAGCTTTTTTTGCGACACAAGGTAGGTTCTCG 57244 Query 39845 ATAGCATTAAA 39855 || ||||| || Sbjct 57243 ATGGCATTGAA 57233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686904317920080