Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq142 104 2e-17 seq212 98.7 8e-16 >seq142 Length=137952 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 43834 ACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAA 43893 ||| |||||||| |||||||| || ||||| || || || || ||||| || || Sbjct 56929 ACACTTTATATCGCATGTTTTGGCCTTCTTTGCAGCATCTGATGGAATTGTCAACGAGAA 56988 Query 43894 TTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTT 43953 | | || || ||| || |||||| || | |||||||||||||||||||| || Sbjct 56989 TCTCGTCGAGCGATTTAGTCAGGAAGTTACTGTAACGGAAGCACGATGTTTTTATGGTTT 57048 Query 43954 TCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACAT 44013 ||||| ||||| ||||| | ||||| || |||||| ||||| || ||||| ||| | Sbjct 57049 CCAAATAGCCATGGAAAACGTCCATTCCGAGATGTACTCCCTTCTCATTGATACCTACGT 57108 Query 44014 CA 44015 || Sbjct 57109 CA 57110 >seq212 Length=2700027 Score = 98.7 bits (108), Expect = 8e-16 Identities = 196/289 (68%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301 |||||| || ||| |||||| || || || |||||| |||| |||| |||||||| Sbjct 1271186 AATTGGTGGCTTGGATAAAGAATTCAATGCTATATTTCGTCGAGCTTTTGCATCGCGTGT 1271127 Query 19302 TTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTA 19361 ||| | |||| || || | ||| | || || || |||||| || ||||| | || Sbjct 1271126 ATTTCCCCCAGAAGTTGTTGAGCAACTAGGGTGCAAGCATGTTAAAGGTATTTTGTTATA 1271067 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA---C 19418 ||| ||||| ||| ||| ||||| || || || || || | | | | || | | Sbjct 1271066 TGGCCCACCAGGTACTGGTAAAACTTTGATGGCCCGACAAATAGGCACCATGCTGAATGC 1271007 Query 19419 AAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 || | | ||| ||||| || ||||| || ||||| | | |||||||| ||| | Sbjct 1271006 AAGAGAGCCT---AAAATCGTGAATGGACCACAAATCCTGGACAAATATGTGGGTGAGAG 1270950 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAA 19527 |||| ||| | | | |||| || || |||||||||||| ||||| Sbjct 1270949 TGAAGCTAATATTAGGAGACTGTTCGCGGATGCTGAAGAAGAAGAAAAA 1270901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397453471434610