Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq223 141 8e-29 seq2 82.4 6e-11 >seq223 Length=3708094 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || | ||||| || | ||||| || ||||||||||| |||||| | Sbjct 240956 CCTCCGCGGAGACGGAGAACCAAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCGGAC 240897 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | ||||| | ||| ||||||||| |||| | |||||||| || || || Sbjct 240896 AAGGTGCGACCATCTTCCAACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTGGA 240837 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||||| || |||||| ||||| | | || | ||||| | ||||||||| Sbjct 240836 ATCCCCTCTTTGTCCTGGATCTTCGCTTTCACGTTCTCAATGGTGTCGGATGCTTCAACT 240777 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 || || || || | ||| || |||| |||||| ||||| || |||||| || Sbjct 240776 TCCAGGGTGATGGTTTTACCGGTCAAAGTTTTGACAAAAATCTGCATACCT 240726 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || | ||||| |||||||| | || || ||||| || || ||||||||| | Sbjct 241640 CCACCTCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAC 241581 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || |||||||| ||||| | |||||||||||||| || ||||| Sbjct 241580 AGGGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGA 241521 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || || || ||||| |||| | ||||| | ||||||||| Sbjct 241520 ATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAACT 241461 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | |||||| || || ||||| || |||||||||||| Sbjct 241460 TCCAGGGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCATA 241413 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | ||||| || | ||| || || || |||||||||||||| Sbjct 239159 TGCCTCCACGAAGTCGAAGAACCAAGTGCAGCGTGGATTCCTTCTGAATATTGTAGTCCG 239100 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| | || || |||||||| ||||| | || |||||||| ||||| |||| Sbjct 239099 ACAACGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATAAGACGCTGCTGATCTGGCG 239040 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || ||||| || || || ||||| |||| | ||||| | ||| || | Sbjct 239039 GGATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCGATCGTGTCAGAGGCCTCTA 238980 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| ||||| |||| ||||||||||| || || || ||||| ||||| Sbjct 238979 CTTCCAGAGTAATAGTTTTGCCCGTCAATGTCTTAACGAAGATCTGCAT 238931 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || |||||||||||||||||| || | |||| | ||||| Sbjct 240051 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTGCGACCATCTTCC 239992 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | |||||||||||| | || | | |||||||| || || | || ||||| || | Sbjct 239991 AACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTGG 239932 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || ||| | | |||| | ||||| | ||| || ||||| | || || | || Sbjct 239931 ATTTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCTTA 239872 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || | ||||||||||| ||||||||| Sbjct 239871 CCAGTTAACGTTTTCACAAAAATTTGCATA 239842 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| |||| || | || ||||| | ||||| || || || ||||||||||| | Sbjct 239613 CCTCCACGCAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCAGAC 239554 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | ||||| | |||||| |||||| |||| | | ||||| || || || Sbjct 239553 AAGGTGCGACCATCTTCCAACTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGGGGG 239494 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| ||||| || | | |||| | ||||| | ||| || ||| Sbjct 239493 ATGCCTTCTTTATCCTGAATCTTTGCCTTAACGTTTTCAATGGTGTCGGAGGCCTCGACT 239434 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||| || || |||||||| ||||| |||||||| Sbjct 239433 TCCAAGGTGATTGTTTTACCGGTAAGAGTTTTGACAAAAATTTGCAT 239387 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||||||||| | | | ||||| || | || || || ||||| || |||||||| Sbjct 238703 TGCCTCCGCGAAGTCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCG 238644 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| ||||||| | ||||| || || |||| | | ||| |||||||| | Sbjct 238643 AAAGGGTGCGGCCGTCTTCCAATTGTTTTCCTGCAAAAATCAACCTCTGCTGATCCGGAG 238584 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | |||||||| || |||||| || | | | || | ||||| | || |||| Sbjct 238583 GGATTCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCAA 238524 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||| ||||| || |||||||||||||| ||||| Sbjct 238523 CCTCGAGGGTGATCGTTTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 238475 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | ||||| || | || || ||||| || || ||||||||| Sbjct 241186 TGCCTCCACGGAGACGAAGAACCAAGTGAAGGGTCGATTCTTTCTGGATGTTGTAGTCGG 241127 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| | ||||| | || || ||||| | || || | ||| || || || | Sbjct 241126 AGAGGGTGCGGCCATCTTCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTG 241067 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| |||| | || | ||| || | ||||| | Sbjct 241066 GGATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCGATAGTATCAGATGCTTCGA 241007 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 |||| || || || | |||||| |||||||| || ||||||||||||||| || Sbjct 241006 CTTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTGACAAAGATTTGCATACCT 240954 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | |||||||| || || || || || ||||| || |||||| | Sbjct 240297 CCTCCCCGGAGACGTAGAACCAAATGCAAGGTGGATTCCTTCTGAATGTTATAGTCGGAC 240238 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | ||||| | ||||||||| ||| | || | | ||||| || || || Sbjct 240237 AAGGTGCGACCATCTTCCAACTGTTTACCCGCGAAGATTAATCTTTGTTGGTCTGGGGGG 240178 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || |||||||| ||||| |||| | || | ||||| | ||||| ||| Sbjct 240177 ATTCCTTCTTTATCCTGAATCTTCGCCTTCACATTCTCAATGGTGTCAGAAGCTTCGACT 240118 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | || || | || || || | |||||||||||| ||||||||| Sbjct 240117 TCCAAGGTGATGGTCTTACCAGTTAAAGTTTTCACAAAAATTTGCATA 240070 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || ||||| || ||||||||| || | | || | || || Sbjct 239367 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCC 239308 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||||||||||| | || |||||||||||||| || || | || ||||| || Sbjct 239307 AATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCTTTGTCCTGA 239248 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || || | |||| | ||| || | |||||| ||||| | || || | || Sbjct 239247 ATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGACTTCCAAGGTAATTGTCTTT 239188 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| || || || || |||||||| Sbjct 239187 CCGGTCAAGGTCTTTACGAATATTTGCAT 239159 >seq2 Length=4278185 Score = 82.4 bits (90), Expect = 6e-11 Identities = 203/304 (67%), Gaps = 7/304 (2%) Strand=Plus/Plus Query 130676 CCGTTGTTGGCTATAATTTCGTTGCGCATACTTTTATCGTACA-ATC-CAAGCTGTACAA 130733 |||||||| || |||||||| || ||| || ||| | | ||| | ||||| | Sbjct 515693 CCGTTGTTTGCAATAATTTCATTTTTCATTTCTTCATCCCAGAGATCTCTTGCTGTG--A 515750 Query 130734 GATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGT 130793 ||||| ||| |||||| || ||||| || || || |||| ||||| || || | Sbjct 515751 GATCTGTTAGCAAATGTGGGTTCATGATCTGGAATTCGCCAGAGAGGACACGCCTTGTAT 515810 Query 130794 AAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTG 130853 | | ||||| ||| | | || | ||||| ||||| || | ||||| ||||||| | Sbjct 515811 AGACATTGCTGGTGTAAGCCTCGATCGATTCATTGTTACCCAGAATTTGCGCTGTAGAGG 515870 Query 130854 CGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCT 130913 | || ||||| ||| | | || ||| || || | || || | | ||||| || Sbjct 515871 CAGTTGGCATTGGTGCAATAAGTAAAGAGTTTCGGATTCCATGTTTAGCTATTTTAGCCT 515930 Query 130914 TCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTA 130973 | | | | |||| ||||| ||| || || | || ||||||||||||| |||||| Sbjct 515931 TTAGTGCTGCCCAGTCCCAAAGATCTGTCGGCGTAAC---GTTCCACATATCATATTGTA 515987 Query 130974 GTAT 130977 | || Sbjct 515988 GAAT 515991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931696620464