Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq223 176 5e-39 seq496 145 9e-30 >seq223 Length=3708094 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || || || ||||| || || || || || ||||| || Sbjct 241414 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACCCTGGAAGTTGAAGCATCG 241473 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| |||| ||||||||||||||||| || |||||||| |||||||| Sbjct 241474 GACACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGAATTCCGCCAGACCAA 241533 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || || || || ||||||| ||| ||||| | ||||| || Sbjct 241534 CAGCGTCTCATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACCCTGTCCGACTACAAC 241593 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| || || ||| | || |||| || || ||||| Sbjct 241594 ATCCAGAAAGAATCAACCCTCCATTTGGTTCTGCGGCTCCGAGGTGG 241640 Score = 172 bits (190), Expect = 6e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | ||||||||||| || ||||| || || || | Sbjct 238703 ATGCAGATCTTCGTAAAGACTTTGACCGGCAAGACCATCACTCTCGATGTCGAAGCTTCC 238762 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | |||||||| || ||||||||||||||||| || ||||||||| Sbjct 238763 GATACGATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 238822 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || |||||| | || |||| || ||||| | ||||| || Sbjct 238823 CAGAGACTGATCTTTGCCGGAAAGCAATTGGAAGATGGCCGCACCCTTTCGGACTACAAC 238882 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || |||||||| |||||| | ||| | ||||| ||||||||| Sbjct 238883 ATCCAGAAAGAATCCACCCTTCATTTGGTCCTCCGTCTCCGCGGTGGA 238930 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || |||||||| || || || || || || || || | Sbjct 240958 ATGCAAATCTTTGTCAAGACTCTGACCGGCAAAACCATCACCCTGGAAGTCGAAGCATCT 241017 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| |||||||||| || ||||||||||||||||| || ||||||||| Sbjct 241018 GATACTATCGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 241077 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || |||||| | || |||| || ||||| | ||||| || Sbjct 241078 CAGAGACTGATCTTTGCCGGAAAGCAATTGGAAGATGGCCGCACCCTCTCCGACTACAAC 241137 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || ||||| || ||||| | || | ||||| || || || Sbjct 241138 ATCCAGAAAGAATCGACCCTTCACTTGGTTCTTCGTCTCCGTGGAGG 241184 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | ||||| ||||| ||||| | || || || | Sbjct 239159 ATGCAAATATTCGTAAAGACCTTGACCGGAAAGACAATTACCTTGGAAGTCGAAGCCTCC 239218 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | |||||||||||||||||||| || ||||| || ||||| || Sbjct 239219 GATACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAAGAAGGAATCCCACCAGATCAA 239278 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| ||||| ||| | ||||||| |||||| | | ||||| || Sbjct 239279 CAGCGTCTTATCTTTGCCGGTAAACAATTGGAGGATGGCCGTACCTTGTCCGACTACAAC 239338 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||||||||| ||||| || | || | ||||| || |||||| Sbjct 239339 ATCCAAAAGGAATCTACTCTCCACTTGGTTCTTCGTCTACGTGGTGGA 239386 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| | || ||||| ||||||||||| || || ||| | Sbjct 238930 AATGCAGATCTTCGTTAAGACATTGACGGGCAAAACTATTACTCTGGAAGTAGAGGCCTC 238989 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | |||| |||| ||||||||||||||||| || ||||| || ||||| || Sbjct 238990 TGACACGATCGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCGCCAGATCA 239049 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || ||||| || || || || ||||||| ||| || | | ||||| || Sbjct 239050 GCAGCGTCTTATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACGTTGTCGGACTACAA 239109 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || ||||||||||| || || | || | || ||||| || || Sbjct 239110 TATTCAGAAGGAATCCACGCTGCACTTGGTTCTTCGACTTCGTGGAGG 239157 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| | ||||| |||||||| || | || || || | Sbjct 239615 ATGCAGATTTTTGTGAAGACTTTAACCGGTAAGACTATCACCTTGGAAGTCGAAGCCTCC 239674 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | |||| ||||||| || ||||| ||||| ||||||||||| ||||||||| Sbjct 239675 GACACCATCGAAAATGTGAAGGCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCAG 239734 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||||||||| || ||||| || |||| || ||| | | || || || Sbjct 239735 CAGAGATTGATTTTTGCTGGCAAACAACTAGAAGATGGGCGCACCTTGTCCGATTACAAC 239794 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||||||||| | ||| |||| | ||||| || || || Sbjct 239795 ATTCAAAAGGAATCCACCTTGCATTTAGTTCTCCGTCTCCGTGGGGG 239841 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || | ||||| || || || || || || ||||| || Sbjct 240730 ATGCAGATTTTTGTCAAAACTTTGACCGGTAAAACCATCACCCTGGAAGTTGAAGCATCC 240789 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || |||| || || || |||||||| ||||| ||||| |||||||| Sbjct 240790 GACACCATTGAGAACGTGAAAGCGAAGATCCAGGACAAAGAGGGGATTCCACCAGACCAA 240849 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| ||||||| || |||||||| | || |||| ||| ||| | | ||||||||| Sbjct 240850 CAGCGATTAATTTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACCTTGTCCGACTATAAT 240909 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| || || || | || | ||||| ||||| || Sbjct 240910 ATTCAAAAGGAATCTACCCTCCACTTGGTTCTCCGTCTCCGCGGAGG 240956 Score = 136 bits (150), Expect = 5e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| |||||||| || || || || || || || || || || ||||||||| | Sbjct 238472 ATCATGCAGATCTTTGTGAAAACCCTCACGGGGAAAACGATCACCCTCGAGGTTGAGGCT 238531 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||||| || | ||||| || || |||||||| |||||||| ||||| || Sbjct 238532 TCCGACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGAATCCCTCCGGAT 238591 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||| | | |||||||| || || ||| | || || | || ||||| | ||||| Sbjct 238592 CAGCAGAGGTTGATTTTTGCAGGAAAACAATTGGAAGACGGCCGCACCCTTTCGGACTAC 238651 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||||||||||||||| ||||| | || | | |||||||| || Sbjct 238652 AACATCCAAAAGGAATCCACCCTTCACTTGGTGCTCAGACTTCGCGGAGG 238701 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| | ||||| || || || || || |||||||| || Sbjct 241186 ATGCAAATCTTCGTAAAGACTTTGACCGGTAAAACCATCACCCTGGAGGTTGAAGCATCC 241245 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || |||| || || || ||||||||||||||||| || ||||||||| Sbjct 241246 GACACCATCGAGAACGTGAAAGCAAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 241305 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || || || || |||||| | || |||| |||||| | | ||||| || Sbjct 241306 CAAAGATTGATCTTCGCCGGAAAGCAATTGGAAGATGGGCGTACCTTGTCGGACTACAAC 241365 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||| || ||||| ||| | | || || ||||| Sbjct 241366 ATTCAGAAGGAATCCACACTCCATCTTGTCCTCAGACTGCGAGGTGG 241412 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || ||| | || || ||||| || || | || || ||| | Sbjct 239843 ATGCAAATTTTTGTGAAAACGTTAACTGGTAAGACCATCACCTTGGAAGTCGAGGCCTCC 239902 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || ||||| |||||||| || |||||||| ||||| || Sbjct 239903 GACACCATCGAAAACGTCAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAA 239962 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || ||||| ||||| || | || |||| ||| ||| | | ||||| ||| Sbjct 239963 CAAAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAAT 240022 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| |||||||| | || | ||||| || || || Sbjct 240023 ATTCAAAAGGAATCTACTCTTCACTTGGTTCTCCGTCTCCGTGGGGG 240069 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || || ||||| || || | || || || | | Sbjct 240071 ATGCAAATTTTTGTGAAAACTTTAACTGGTAAGACCATCACCTTGGAAGTCGAAGCTTCT 240130 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || |||||||| || || ||||| || |||||||| Sbjct 240131 GACACCATTGAGAATGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCCCCAGACCAA 240190 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | |||| || || ||||| || | || |||| ||| ||| | | |||||||| Sbjct 240191 CAAAGATTAATCTTCGCGGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTATAAC 240250 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||||||||| | ||| | || | ||||| || || || Sbjct 240251 ATTCAGAAGGAATCCACCTTGCATTTGGTTCTACGTCTCCGGGGAGG 240297 >seq496 Length=1672140 Score = 145 bits (160), Expect = 9e-30 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || || || || || || |||||||| ||| | Sbjct 1564478 ATGCAGATCTTCGTGAAGACCCTGACGGGTAAAACCATCACCCTTGAGGTGGAGGCTTCC 1564537 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | |||||||| || ||||||||||| |||||||| || || ||| Sbjct 1564538 GATACTATTGAAAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATTCCACCTGATCAG 1564597 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||||||||| ||||| || |||| |||||| || | ||||| ||| Sbjct 1564598 CAGAGATTGATCTTTGCTGGTAAACAACTAGAAGATGGTCGTACTCTCTCTGACTACAAT 1564657 Query 27586 GTCCAAAAGG 27595 |||| |||| Sbjct 1564658 ATCCAGAAGG 1564667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306678724640