Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq223 131 1e-25 seq257 82.4 5e-11 >seq223 Length=3708094 Score = 131 bits (144), Expect = 1e-25 Identities = 164/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| || ||||||||||| ||||| || || | || || Sbjct 240947 AGACGGAGAACCAAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCGGACAAGGTGCGA 240888 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || |||||||| || ||||| ||||||||||| || || | ||||| Sbjct 240887 CCATCTTCCAACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTGGAATCCCCTCT 240828 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| |||| || | ||| ||| | ||| ||||| ||| || ||||||| || Sbjct 240827 TTGTCCTGGATC-TTCGCTTTCACGTTCTCAATGGTGTCGGATGCT-TCAACTTCCAGGG 240770 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || ||||||||||| || ||||| |||||||||||||| Sbjct 240769 TGATGGTTTTACCGGTCAAAGTTTTGACAAAAATCTGCAT 240730 Score = 127 bits (140), Expect = 1e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || ||||| | ||| |||||||||||||| ||||| || | || ||| Sbjct 239832 AGACGGAGAACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCGC 239773 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||| || ||||| || || | ||| ||||| || || | |||||| Sbjct 239772 CCATCTTCTAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCT 239713 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTT 34668 |||||| |||||| || | | || ||||| | || ||||||| ||| Sbjct 239712 TTGTCTTGAATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTG 239653 Query 34669 ATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||||||||| || ||||||||||||||||| Sbjct 239652 ATAGTCTTACCGGTTAAAGTCTTCACAAAAATCTGCAT 239615 Score = 122 bits (134), Expect = 5e-23 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || ||||| ||||||||||| || || || || | || || Sbjct 240060 AGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTGCGA 240001 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | |||||||||||||| || || | ||||| || || || | ||| || Sbjct 240000 CCATCTTCCAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCT 239941 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||||| ||| ||| | || ||||| | ||| ||||||| ||| Sbjct 239940 TTGTCCTGGAT-TTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGT 239882 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| |||||||||||||||||||| ||||| Sbjct 239881 GATGGTCTTACCAGTTAACGTTTTCACAAAAATTTGCAT 239843 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | ||| | | |||||| || || ||| |||||||| ||||| || || || Sbjct 238702 GCCTCCGCGAAGTCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGA 238643 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || ||||||| | |||||| || ||||| || || | ||| || ||||| || Sbjct 238642 AAGGGTGCGGCCGTCTTCCAATTGTTTTCCTGCAAAAATCAACCTCTGCTGATCCGGAGG 238583 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | |||||| ||||| ||||||| | || ||| | ||| ||||| ||| | Sbjct 238582 GATTCCCTCTTTGTCCTGGATCTTT-GCCTTGACGTTCTCAATGGTGTCGGAAGCCTCAA 238524 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| |||||||| || || | ||||||||||| ||||||||| Sbjct 238523 CCTCGAGGGTGATCGTTTTCCCCGTGAGGGTTTTCACAAAGATCTGCATG 238474 Score = 105 bits (116), Expect = 4e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || |||| ||||||||||| || || || || ||||| || || || Sbjct 241640 CCACCTCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAC 241581 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || ||||| |||||||| || | |||||||||||| ||||| Sbjct 241580 AGGGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGA 241521 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGT-CTTCGCTCTCCA 34657 | ||| || ||||| ||| ||| | ||| || | ||| |||| | ||| || | Sbjct 241520 ATTCCTTCTTTGTC-CTGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCT-TCAA 241463 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| ||| || ||||| || |||| ||||| || || || ||||| Sbjct 241462 CTTCCAGGGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 Score = 98.7 bits (108), Expect = 6e-16 Identities = 157/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | ||| ||||| ||||||||||| || || | || || Sbjct 240288 AGACGTAGAACCAAATGCAAGGTGGATTCCTTCTGAATGTTATAGTCGGACAAGGTGCGA 240229 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | |||||||| || || ||||| | |||||||| || || | ||| || Sbjct 240228 CCATCTTCCAACTGTTTACCCGCGAAGATTAATCTTTGTTGGTCTGGGGGGATTCCTTCT 240169 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 || || ||| || | || || | ||| ||||| ||| || ||||||| || Sbjct 240168 TTATC-CTGAATCTTCGCCTTCACATTCTCAATGGTGTCAGAAGCT-TCGACTTCCAAGG 240111 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || ||||| ||||| |||||||||||||| ||||| Sbjct 240110 TGATGGTCTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 240071 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 34503 ATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTG 34562 |||||| ||| ||||| |||||||| || || || | || ||| | ||||| | ||| Sbjct 241389 ATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCCGACAAGGTACGCCCATCTTCCAATTG 241330 Query 34563 TTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTT 34622 || ||||| || || || | || ||||| || || | |||||||||||| |||| | Sbjct 241329 CTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGGATC-T 241271 Query 34623 TTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCG 34680 ||| ||| ||| | || ||||| ||| || || |||| ||| || ||||||||| Sbjct 241270 TTGCTTTCACGTTCTCGATGGTGTCGGATGCT-TCAACCTCCAGGGTGATGGTTTTACCG 241212 Query 34681 GTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || || |||||| Sbjct 241211 GTCAAAGTCTTTACGAAGATTTGCATG 241185 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | || ||||| ||||| ||||| || || || || || || | || || Sbjct 239604 AGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGA 239545 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||| ||||| || ||||| | |||||||| || || | || || Sbjct 239544 CCATCTTCCAACTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGGGGGATGCCTTCT 239485 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||||| | |||||| | ||| ||||| | ||| ||||||| ||| Sbjct 239484 TTATCCTGAATCTTT-GCCTTAACGTTTTCAATGGTGTCGGAGGCCTCGACTTCCAAGGT 239426 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||||||||| | ||||| |||||||| ||||| Sbjct 239425 GATTGTTTTACCGGTAAGAGTTTTGACAAAAATTTGCAT 239387 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| |||||||| |||||||| ||||| || || || | || || Sbjct 239376 AGACGAAGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGG 239317 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | ||||||||||||||| || | ||||||||| || || || | ||| || Sbjct 239316 CCATCCTCCAATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCT 239257 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | || || | ||| || || | || ||||||| ||| Sbjct 239256 TTGTC-CTGAATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGACTTCCAAGGT 239198 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| || || || || || || |||||| Sbjct 239197 AATTGTCTTTCCGGTCAAGGTCTTTACGAATATTTGCATG 239158 >seq257 Length=1448838 Score = 82.4 bits (90), Expect = 5e-11 Identities = 95/127 (75%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | |||||||||||| ||| || || || ||||| ||||| ||| Sbjct 383048 CCACCACGAAGGCGAAGCACCAAATGGAGCGTGGATTCTTTCTGGATGTTGTAATCGGAA 383107 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | || |||||||| || |||||||| || || || ||||| || || || Sbjct 383108 AGAGTTCTTCCATCCTCAAGTTGCTTGCCGGCAAAAATCAACCGTTGTTGATCAGG-GGG 383166 Query 34600 ACTCCCT 34606 | ||||| Sbjct 383167 AATCCCT 383173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314727597729626