Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq223 159 3e-34 >seq223 Length=3708094 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| ||||| ||||| || ||||||| ||| | ||||| | ||||| ||| | || Sbjct 239158 CATGCAAATATTCGTAAAGACCTTGACCGGAAAGACAATTACCTTGGAAGTCGAAGCCTC 239217 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| |||||||| ||||||||||| || ||||| ||||| Sbjct 239218 CGATACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAAGAAGGAATCCCACCAGATCA 239277 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||||| | || | ||||| ||||||||||| || | ||| | ||||| ||||| Sbjct 239278 ACAGCGTCTTATCTTTGCCGGTAAACAATTGGAGGATGGCCGTACCTTGTCCGACTACAA 239337 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||||||| || || | || |||||| | ||| | || ||||| || Sbjct 239338 CATCCAAAAGGAATCTACTCTCCACTTGGTTCTTCGTCTACGTGGTGGAAT 239388 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| ||||||| || | || || || ||||| ||| | ||| Sbjct 240730 ATGCAGATTTTTGTCAAAACTTTGACCGGTAAAACCATCACCCTGGAAGTTGAAGCATCC 240789 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| || || || |||||||| || || ||||| || ||| Sbjct 240790 GACACCATTGAGAACGTGAAAGCGAAGATCCAGGACAAAGAGGGGATTCCACCAGACCAA 240849 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| ||||| | |||||| || || |||||||| || ||| | ||||| || || Sbjct 240850 CAGCGATTAATTTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACCTTGTCCGACTATAAT 240909 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || ||| | || |||||| | ||| | || || || || Sbjct 240910 ATTCAAAAGGAATCTACCCTCCACTTGGTTCTCCGTCTCCGCGGAGGTAT 240959 Score = 149 bits (164), Expect = 5e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| | ||||| ||| |||| || | ||||| ||| | ||| Sbjct 239615 ATGCAGATTTTTGTGAAGACTTTAACCGGTAAGACTATCACCTTGGAAGTCGAAGCCTCC 239674 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||| |||||||||||||| || || ||||| || || Sbjct 239675 GACACCATCGAAAATGTGAAGGCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCAG 239734 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || ||||||||| | ||||| | ||| | |||||||||||| Sbjct 239735 CAGAGATTGATTTTTGCTGGCAAACAACTAGAAGATGGGCGCACCTTGTCCGATTACAAC 239794 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || ||||| ||||| ||| | ||| | || || || || Sbjct 239795 ATTCAAAAGGAATCCACCTTGCATTTAGTTCTCCGTCTCCGTGGGGGTAT 239844 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || ||||| | || || || ||||| ||| | || Sbjct 241414 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACCCTGGAAGTTGAAGCATCG 241473 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| |||||||| ||||||||||| || || || || ||| Sbjct 241474 GACACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGAATTCCGCCAGACCAA 241533 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||||| |||| || || ||| | ||||| |||||| Sbjct 241534 CAGCGTCTCATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACCCTGTCCGACTACAAC 241593 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || || || ||| | ||||||||| |||| | || ||||| Sbjct 241594 ATCCAGAAAGAATCAACCCTCCATTTGGTTCTGCGGCTCCGAGGTGG 241640 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| ||||| || | || || | ||||| || | ||| Sbjct 239387 ATGCAAATTTTTGTCAAAACTCTTACCGGTAAAACAATCACCTTGGAAGTCGAGGCCTCC 239446 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||| ||||| || ||||||||||| || || || ||| Sbjct 239447 GACACCATTGAAAACGTTAAGGCAAAGATTCAGGATAAAGAAGGCATCCCCCCAGACCAA 239506 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | ||||| | |||||||||||| |||||||| || ||| | || || ||||| Sbjct 239507 CAAAGATTAATTTTCGCCGGCAAACAGTTGGAAGATGGTCGCACCTTGTCTGACTACAAT 239566 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | ||||| ||| | ||| |||| || || || Sbjct 239567 ATCCAGAAGGAATCTACTCTTCATTTAGTTCTCCGTCTGCGTGGAGGTAT 239616 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| ||||| |||||||||| ||||| || | || Sbjct 238931 ATGCAGATCTTCGTTAAGACATTGACGGGCAAAACTATTACTCTGGAAGTAGAGGCCTCT 238990 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || ||| |||||||| ||||||||||| || || || ||||| Sbjct 238991 GACACGATCGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCGCCAGATCAG 239050 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 |||||| | || | ||||||||||| |||| || | ||| |||| || || ||||| Sbjct 239051 CAGCGTCTTATCTTTGCCGGCAAACAGCTGGAGGA-TGGTCGCACGTTGTCGGACTACAA 239109 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || | || |||||| | || | || || ||||| Sbjct 239110 TATTCAGAAGGAATCCACGCTGCACTTGGTTCTTCGACTTCGTGGAGGCAT 239160 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| ||||| || || || || | || || || || || || | || Sbjct 238474 CATGCAGATCTTTGTGAAAACCCTCACGGGGAAAACGATCACCCTCGAGGTTGAGGCTTC 238533 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| ||||| ||| || || |||||||| || || || || ||||| Sbjct 238534 CGACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGAATCCCTCCGGATCA 238593 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | || || | || || ||||||||||||||| | ||| |||| || ||||| Sbjct 238594 GCAGAGGTTGATTTTTGCAGGAAAACAATTGGAAGACGGCCGCACCCTTTCGGACTACAA 238653 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||| |||||||| || ||| | || ||||| Sbjct 238654 CATCCAAAAGGAATCCACCCTTCACTTGGT 238683 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| | || || ||| | || || | ||||| || | ||| Sbjct 239843 ATGCAAATTTTTGTGAAAACGTTAACTGGTAAGACCATCACCTTGGAAGTCGAGGCCTCC 239902 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| |||||| || ||||||||||| || || || |||||| Sbjct 239903 GACACCATCGAAAACGTCAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAA 239962 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||||| ||||| |||||||| || ||| | ||||| ||||| Sbjct 239963 CAAAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAAT 240022 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | || |||||| | ||| | || || || || Sbjct 240023 ATTCAAAAGGAATCTACTCTTCACTTGGTTCTCCGTCTCCGTGGGGGTAT 240072 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || ||||| ||| ||||||||||| | || ||||| || || ||| | || Sbjct 238702 CATGCAGATCTTCGTAAAGACTTTGACCGGCAAGACCATCACTCTCGATGTCGAAGCTTC 238761 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | ||||| || || || ||||| || || || ||||| || || Sbjct 238762 CGATACGATCGAAAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATCCCACCAGACCA 238821 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||||| || ||||||||||| | ||| |||| || ||||| Sbjct 238822 GCAGAGACTGATCTTTGCCGGAAAGCAATTGGAAGATGGCCGCACCCTTTCGGACTACAA 238881 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || ||| | |||||||| | ||| | || ||||| || Sbjct 238882 CATCCAGAAAGAATCCACCCTTCATTTGGTCCTCCGTCTCCGCGGTGGAAT 238932 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || |||||||||||||| | || || || ||||| ||| | || Sbjct 240958 ATGCAAATCTTTGTCAAGACTCTGACCGGCAAAACCATCACCCTGGAAGTCGAAGCATCT 241017 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || || || || ||||| || || || ||||| || || Sbjct 241018 GATACTATCGAGAATGTGAAGGCTAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAG 241077 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| || ||||||||||| | ||| | ||||| |||||| Sbjct 241078 CAGAGACTGATCTTTGCCGGAAAGCAATTGGAAGATGGCCGCACCCTCTCCGACTACAAC 241137 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || |||||| | || |||||| | ||| | || || ||||| Sbjct 241138 ATCCAGAAAGAATCGACCCTTCACTTGGTTCTTCGTCTCCGTGGAGGCAT 241187 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || ||||| ||| ||||||| || | || || || || || ||| | || Sbjct 241185 CATGCAAATCTTCGTAAAGACTTTGACCGGTAAAACCATCACCCTGGAGGTTGAAGCATC 241244 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | || |||| || ||| ||| || || ||||| || || || ||||| || || Sbjct 241245 CGACACCATCGAGAACGTGAAAGCAAAGATCCAGGACAAGGAGGGAATCCCACCAGACCA 241304 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || | || || | |||||| || ||||||||||| | ||| | || || ||||| Sbjct 241305 GCAAAGATTGATCTTCGCCGGAAAGCAATTGGAAGATGGGCGTACCTTGTCGGACTACAA 241364 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| ||||| || || | ||| | || | | |||| ||||| || Sbjct 241365 CATTCAGAAGGAATCCACACTCCATCTTGTCCTCAGACTGCGAGGTGGTAT 241415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434915562157440