Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq223 107 1e-18 >seq223 Length=3708094 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||||||||| | ||||| || || || | || ||||| | || Sbjct 239843 ATGCAAATTTTTGTGAAAACGTTAACTGGTAAGACCATCACCTTGGAAGTCGAGGCCTCC 239902 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || |||||| |||||| ||||||||||| |||| || || Sbjct 239903 GACACCATCGAAAACGTCAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAA 239962 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| | || || |||||||| ||||| ||||| || | |||| ||||||||| ||||| Sbjct 239963 CAAAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAAT 240022 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| || ||| | || |||||| | ||| | ||||| || Sbjct 240023 ATTCAAAAGGAATCTACTCTTCACTTGGTTCTCCGTCTCCGTGGGGG 240069 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| ||| | || || || ||| || | || |||||| | || Sbjct 239615 ATGCAGATTTTTGTGAAGACTTTAACCGGTAAGACTATCACCTTGGAAGTCGAAGCCTCC 239674 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || || ||| || |||||||| || |||| || | Sbjct 239675 GACACCATCGAAAAT--GTGAAGGCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACC 239732 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || |||||||| || |||||| | || || | |||| |||||||||||||| Sbjct 239733 AGCAGAGATTGATTTTTGCTGGCAAACAACTAGAAGATGGGCGCACCTTGTCCGATTACA 239792 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| || ||| |||||||| ||| | ||| | ||||| || Sbjct 239793 ACATTCAAAAGGAATCCACCTTGCATTTAGTTCTCCGTCTCCGTGGGGG 239841 Score = 102 bits (112), Expect = 6e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| ||||||||||| || ||| || || | || ||||| | | Sbjct 239386 AATGCAAATTTTTGTCAAAACTCTTACCGGTAAAACAATCACCTTGGAAGTCGAGGCCTC 239445 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGA 27905 || || || | || || | | |||| | | || || |||||||| | || || Sbjct 239446 CGACACCAT-TGAAAACGTTAAGGCAAAGATTCAG--GATAAAGAAGGCATCCCCCCAGA 239502 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 || ||| | |||||||| ||||| ||||| ||||| || | |||| |||||| || || Sbjct 239503 CCAACAAAGATTAATTTTCGCCGGCAAACAGTTGGAAGATGGTCGCACCTTGTCTGACTA 239562 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| ||||| || || ||| | ||||| ||| | ||| ||||||| || Sbjct 239563 CAATATCCAGAAGGAATCTACTCTTCATTTAGTTCTCCGTCTGCGTGGAGG 239613 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || ||||| || ||||| ||| || || | || || ||| ||| | Sbjct 241414 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACCCTGGAAGTTGAA-GCATC 241472 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| || ||| ||||| ||||||||||| ||||| || Sbjct 241473 GGACACCATTGAAAAT--GTGAAAGCTAAAATTCAGGACAAAGAAGGAATTCCGCCAGAC 241530 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || | || |||||||| ||||| |||| || | |||| | ||||||| ||| Sbjct 241531 CAACAGCGTCTCATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACCCTGTCCGACTAC 241590 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCG 28004 |||||||| ||||| || | ||||||||| |||| Sbjct 241591 AACATCCAGAAAGAATCAACCCTCCATTTGGTTCTGCG 241628 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || || |||||| || || | || || || || Sbjct 238475 ATGCAGATCTTTGTGAAAACCCTCACGGGGAAAACGATCACCCTCGAGGTTGAGGCTTCC 238534 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | || ||||| ||| || |||||||| || | || ||| | Sbjct 238535 GACACCATTGAGAAC--GTCAAGGCAAAGATCCAGGACAAAGAGGGAATCCCTCCGGATC 238592 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| |||||||| |||||||||||||| |||| |||| | | || || |||| Sbjct 238593 AGCAGAGGTTGATTTTTGCAGGAAAACAATTGGAAGACGGCCGCACCCTTTCGGACTACA 238652 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||||| || ||| | || ||||| Sbjct 238653 ACATCCAAAAGGAATCCACCCTTCACTTGGT 238683 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || || | || || || ||||| | || |||||| | || Sbjct 239159 ATGCAAATATTCGTAAAGACCTTGACCGGAAAGACAATTACCTTGGAAGTCGAAGCCTCC 239218 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| ||||| ||||||||||| | || || | Sbjct 239219 GATACTATTGAAAAT--GTCAAGGCTAAAATTCAGGACAAAGAAGGAATCCCACCAGATC 239276 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || |||||||| ||||||||||| || | || | ||||||||| |||| Sbjct 239277 AACAGCGTCTTATCTTTGCCGGTAAACAATTGGAGGATGGCCGTACCTTGTCCGACTACA 239336 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || ||| | || |||||| | ||| | ||||| || Sbjct 239337 ACATCCAAAAGGAATCTACTCTCCACTTGGTTCTTCGTCTACGTGGTGG 239385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355860136047894