Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq223 174 4e-38 seq496 105 2e-17 >seq223 Length=3708094 Score = 174 bits (192), Expect = 4e-38 Identities = 171/221 (77%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || ||||| |||||||| || || ||||| || || || ||||| || |||| | ||| Sbjct 241406 CGCAGTCTGAGGACAAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCCGACAAGGTA 241347 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||||| ||||| || |||||||| | | ||| ||||| || || | ||| Sbjct 241346 CGCCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCC 241287 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||||||||||||| ||||||||| ||||||||||| || ||||||||| || Sbjct 241286 TCCTTGTCCTGGATCTTTGCTTTCACGTTCTCGATGGTGTCGGATGCTTCAACCTCCAGG 241227 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || | ||||||||| || | ||||| Sbjct 241226 GTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 241186 Score = 170 bits (188), Expect = 4e-37 Identities = 175/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| || || | |||||| ||||| || ||||||||||| || |||| |||||| Sbjct 238695 CGAAGTCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAAAGGGTG 238636 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || ||||||| || || ||||| || || | | || || || ||||| | ||| Sbjct 238635 CGGCCGTCTTCCAATTGTTTTCCTGCAAAAATCAACCTCTGCTGATCCGGAGGGATTCCC 238576 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||||||||||||| || ||||| || |||||||| || ||||||||||| Sbjct 238575 TCTTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCAACCTCGAGG 238516 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT--TTTAT 211119 |||||||| || |||||||| || || ||||| | |||||| ||||| Sbjct 238515 GTGATCGTTTTCCCCGTGAGGGTTTTCACAAAGATCTGCATGATTTAT 238468 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||| ||||| ||||| |||||||| || |||| |||||| | |||||| Sbjct 238914 AGGACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCT 238855 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || || ||||| || | || ||||| || || | ||| ||||||||| Sbjct 238854 TCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCC 238795 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || |||||||| || || || ||| || ||||||||||| ||| Sbjct 238794 TGGATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCGACATCGAGAGTGATGGTC 238735 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||||||| || | |||||| Sbjct 238734 TTGCCGGTCAAAGTCTTTACGAAGATCTGCAT 238703 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || || || ||||| || ||||| || | | ||| | |||||| Sbjct 240941 AGAACCAAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCGGACAAGGTGCGACCATCT 240882 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || ||||| || | || |||||||| || |||| || || |||||| Sbjct 240881 TCCAACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTGGAATCCCCTCTTTGTCC 240822 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||||||| || |||||||| || |||||| || || ||||| || Sbjct 240821 TGGATCTTCGCTTTCACGTTCTCAATGGTGTCGGATGCTTCAACTTCCAGGGTGATGGTT 240762 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||| || ||||| | |||||| Sbjct 240761 TTACCGGTCAAAGTTTTGACAAAAATCTGCAT 240730 Score = 140 bits (154), Expect = 8e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | |||||| || || ||||| |||||||| || || | || Sbjct 241182 TCCACGGAGACGAAGAACCAAGTGAAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAG 241123 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | |||||||||| ||||| || || ||||| || | || ||||| || || | Sbjct 241122 GGTGCGGCCATCTTCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGAT 241063 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||| ||||||||||||||||| ||||| || ||||| || ||||| ||| || || Sbjct 241062 TCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCGATAGTATCAGATGCTTCGACTTC 241003 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || || || |||||||| ||||| | ||||| Sbjct 241002 CAGGGTGATGGTTTTGCCGGTCAGAGTCTTGACAAAGATTTGCAT 240958 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||||||||| || || ||||| || || || || | | ||| | |||||| Sbjct 240054 AGAACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTGCGACCATCT 239995 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || || || ||||| | | |||||| || || |||| |||||| |||||| Sbjct 239994 TCCAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCC 239935 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| ||| ||| ||||||||||||||||| ||| || || || | ||||| ||| Sbjct 239934 TGGATTTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTC 239875 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | || || ||||| | ||||| Sbjct 239874 TTACCAGTTAACGTTTTCACAAAAATTTGCAT 239843 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| || ||||| ||||| ||||| | | ||| | |||||||| || || ||||| Sbjct 239811 GTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCGCCCATCTTCTAGTTGTTTGCCA 239752 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || || | | || ||||| || |||| ||| || ||||| || |||||| ||| Sbjct 239751 GCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCTTGAATCTTTGCCTTC 239692 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || |||||||||||||| ||| ||| || || | ||||| ||||| || || | |||| Sbjct 239691 ACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTCTTACCGGTTAAAGTC 239632 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | |||||| Sbjct 239631 TTCACAAAAATCTGCAT 239615 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 ||||| || || || |||||||| || | | ||| | |||||||||| ||| || || Sbjct 240267 GTGGATTCCTTCTGAATGTTATAGTCGGACAAGGTGCGACCATCTTCCAACTGTTTACCC 240208 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| | | ||||||||| || || | |||||| || ||||| ||||| ||| Sbjct 240207 GCGAAGATTAATCTTTGTTGGTCTGGGGGGATTCCTTCTTTATCCTGAATCTTCGCCTTC 240148 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || || ||||||||||| ||| || || | ||||| ||||| || || | ||| Sbjct 240147 ACATTCTCAATGGTGTCAGAAGCTTCGACTTCCAAGGTGATGGTCTTACCAGTTAAAGTT 240088 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 240087 TTCACAAAAATTTGCAT 240071 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| || || ||||||||||| || || | | ||| | ||||| Sbjct 239370 AGAACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCC 239311 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| || || || || |||||||| || ||||| || || || | |||||| |||||| Sbjct 239310 TCCAATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCTTTGTCC 239251 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || || || ||||| || || || ||| ||| || || | || || ||| Sbjct 239250 TGAATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGACTTCCAAGGTAATTGTC 239191 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | |||||||| || | ||||| Sbjct 239190 TTTCCGGTCAAGGTCTTTACGAATATTTGCAT 239159 >seq496 Length=1672140 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || ||||| || || || | || || | |||||||| || || || || || ||||| Sbjct 1564665 TTCTGGATATTGTAGTCAGAGAGAGTACGACCATCTTCTAGTTGTTTACCAGCAAAGATC 1564606 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | | || || ||||| |||| ||||||||||||||||||||| || || ||||| Sbjct 1564605 AATCTCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTTTCA 1564546 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 || || || || || ||||| || ||||| || || ||||| || ||||| || || Sbjct 1564545 ATAGTATCGGAAGCCTCCACCTCAAGGGTGATGGTTTTACCCGTCAGGGTCTTCACGAAG 1564486 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 1564485 ATCTGCAT 1564478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159144247446530