Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq223 159 8e-34 seq496 105 2e-17 seq520 93.3 1e-13 seq257 87.8 4e-12 seq179 86.0 1e-11 >seq223 Length=3708094 Score = 159 bits (176), Expect = 8e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || ||||| |||||||| ||||| |||||||| || || | ||||| || | ||| || Sbjct 241406 CGCAGTCTGAGGACAAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCCGACAAGGTA 241347 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||||||| | ||||| || |||||||| | || ||| ||||| || || || || Sbjct 241346 CGCCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCC 241287 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| ||||||||| ||||| ||||||||||| || | ||| || || | Sbjct 241286 TCCTTGTCCTGGATCTTTGCTTTCACGTTCTCGATGGTGTCGGATGCTTCAACCTCCAGG 241227 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || |||||||| |||| ||| | |||||| Sbjct 241226 GTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 241186 Score = 152 bits (168), Expect = 1e-31 Identities = 143/182 (79%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||| ||||| | |||||||||| ||| || | |||||||||||| || || ||| Sbjct 239811 GTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCGCCCATCTTCTAGTTGTTTGCCA 239752 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || | || || ||||| || ||||| || || |||||||| |||||| |||| Sbjct 239751 GCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCTTGAATCTTTGCCTTC 239692 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| |||||||||||| |||| ||| || || || ||||| ||||| || || ||||| Sbjct 239691 ACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTCTTACCGGTTAAAGTC 239632 Query 225697 TT 225698 || Sbjct 239631 TT 239630 Score = 143 bits (158), Expect = 6e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| ||||| ||||| | |||||| |||| ||| || | |||||| Sbjct 240054 AGAACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTGCGACCATCT 239995 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||| || || || ||||| | || |||||| || || ||||| ||||| ||||| Sbjct 239994 TCCAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCC 239935 Query 225622 TGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| |||||||| || |||||||||||| |||| || || || || ||||| || Sbjct 239934 TGGAT-TTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGT 239876 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || || || ||||| | || | |||||| Sbjct 239875 CTTACCAGTTAACGTTTTCACAAAAATTTGCAT 239843 Score = 136 bits (150), Expect = 9e-27 Identities = 166/224 (74%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| || || | ||| || |||||||| || || | |||||| || | ||| || Sbjct 239152 ACGAAGTCGAAGAACCAAGTGCAGCGTGGATTCCTTCTGAATATTGTAGTCCGACAACGT 239093 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || ||||| || || || |||||||| || || || || ||||| || || Sbjct 239092 GCGACCATCCTCCAGCTGTTTGCCGGCAAAGATAAGACGCTGCTGATCTGGCGGGATTCC 239033 Query 225612 TTCCTTGTCTTGGATCTTTTGCTT-CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| ||||| || || ||| |||| |||| |||||| ||||| |||| || || || | Sbjct 239032 TTCTTTGTCCTGAAT-TTTAGCTTTCACATTTTCGATCGTGTCAGAGGCCTCTACTTCCA 238974 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || ||||||||||| || || | ||| | |||||| Sbjct 238973 GAGTAATAGTTTTGCCCGTCAATGTCTTAACGAAGATCTGCATT 238930 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | || || ||||||||||| |||| ||||| || | | || | |||||| Sbjct 238914 AGGACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCT 238855 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| || || ||||| |||| || ||||| || || || || |||||||| Sbjct 238854 TCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCC 238795 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| |||||| || || || | ||| || || | ||||| ||| Sbjct 238794 TGGATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCGACATCGAGAGTGATGGTC 238735 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| |||| ||| | ||||| Sbjct 238734 TTGCCGGTCAAAGTCTTTACGAAGATCTGCAT 238703 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| || ||||| ||||| | ||| || |||| ||| || | |||||| Sbjct 240941 AGAACCAAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCGGACAAGGTGCGACCATCT 240882 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| || ||||| || | ||| |||||||| || ||||| || || ||||| Sbjct 240881 TCCAACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTGGAATCCCCTCTTTGTCC 240822 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||| || |||||||| || | ||| || || | ||||| || Sbjct 240821 TGGATCTTCGCTTTCACGTTCTCAATGGTGTCGGATGCTTCAACTTCCAGGGTGATGGTT 240762 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || ||||||||||| Sbjct 240761 TTACCGGTCAAAGTTTT 240745 >seq496 Length=1672140 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 5/201 (2%) Strand=Plus/Minus Query 225518 TGGATTCT-----TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTT 225572 |||||||| || |||| |||||| || | | ||| | ||||||||||| || || Sbjct 1564678 TGGATTCTCACCCTTCTGGATATTGTAGTCAGAGAGAGTACGACCATCTTCTAGTTGTTT 1564619 Query 225573 CCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTG 225632 ||||| ||||| | || || || || || ||||| ||||||||||| |||||||| Sbjct 1564618 ACCAGCAAAGATCAATCTCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTAGC 1564559 Query 225633 CTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 ||| ||| ||| || || || || | ||||| || | ||||| || || ||||||| Sbjct 1564558 CTTGACATTTTCAATAGTATCGGAAGCCTCCACCTCAAGGGTGATGGTTTTACCCGTCAG 1564499 Query 225693 AGTTTTTATGAACACTTGCAT 225713 || || | ||| | ||||| Sbjct 1564498 GGTCTTCACGAAGATCTGCAT 1564478 >seq520 Length=156016 Score = 93.3 bits (102), Expect = 1e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| ||||||||||| ||||||||||| || | ||||| || ||||| || || Sbjct 79497 TTCAGGATGTCCAAAAAATCAAAATAAATGTTGGTATAAAATAGGGTCACCTCCTCCGGA 79438 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| ||||| || |||| |||||||| Sbjct 79437 AGGATCAAAAAATGATGTATTTAAGTTTCGGTCAGTTAA 79399 >seq257 Length=1448838 Score = 87.8 bits (96), Expect = 4e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||||| ||||||||||| |||| |||||||||| | ||| Sbjct 383053 ACGAAGGCGAAGCACCAAATGGAGCGTGGATTCTTTCTGGATGTTGTAATCGGAAAGAGT 383112 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| ||||| || || ||||| || || || || | |||||||| || || ||||| || Sbjct 383113 TCTTCCATCCTCAAGTTGCTTGCCGGCAAAAATCAACCGTTGTTGATCAGGGGGAATCCC 383172 Query 225612 T 225612 | Sbjct 383173 T 383173 >seq179 Length=2379325 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||| || || || || ||||| |||||||| || || || |||||||| Sbjct 1339710 GAAGATTTGTCCATCGGTGATGGAAATTACATTGGTAGGGATGTAGGCGGATACATCACC 1339769 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||| ||||| | ||| || | || || || ||||||||||| Sbjct 1339770 AGCTTGGGTTTCAATAACGGGAAGAGCAGTGAGGGATCCACCACC 1339814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192523224202268