Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2 158 2e-33 seq142 93.3 6e-14 >seq2 Length=4278185 Score = 158 bits (174), Expect = 2e-33 Identities = 248/347 (71%), Gaps = 11/347 (3%) Strand=Plus/Plus Query 77523 ATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTA 77582 ||||| ||||||||||||||| ||||||| ||| ||||||||||| ||||| || || Sbjct 516340 ATACCGATAGGTCTATGTCTCATATTGGATCTTTCGGCTTCTGGAATTGGATAGTAGTTG 516399 Query 77583 ATGTCTATAATTTTATTGAGATTTCTAA-CAACTACTTTAACCACGTCCTTTAGTTTAAG 77641 || || || ||||| || | | || || |||| | ||| ||| || |||||||| Sbjct 516400 ATATCGATGATTTTGTTCA-AGTTATATGCAACAATTTTGGTCACTTCTTTTAGTTTTTT 516458 Query 77642 AAAATCAAA--TCTTCCATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTA 77696 |||| | |||| |||| | ||||||||||| | ||| || ||||| ||||| Sbjct 516459 GAAATTGTAGGTCTT--ATCTGGGTTCACAAACATGTTGACAGCAATCGATGCAAGATTG 516516 Query 77697 CAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACAT 77756 ||||| || | |||| | | ||| ||||| || || |||||||| || || || ||| Sbjct 516517 CAAACCGCGATTTCATCGGGGCTGGAATATTCTACAATTTCGGTACAAAGGTTGCTGCAT 516576 Query 77757 TTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCA-TGAGTCCTTATAAAGAAT 77815 || ||||| || | ||| || || ||| || ||| || ||| || ||||| || || Sbjct 516577 TTAATAGTTCCAACATTCTGCTGATTGGATTTGCGATTACAGTGA-TCTTTATACAGCAT 516635 Query 77816 AAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGA 77862 | || || ||||| |||| |||||| | ||||| | | ||||| Sbjct 516636 GTAAGGTGTTCCGGTCTCAACCTGTGAGTTTATAATGGCTAACCAGA 516682 Score = 140 bits (154), Expect = 5e-28 Identities = 126/157 (80%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 78744 CTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATA 78803 ||||| | ||||||||| |||||||| ||||||||||||||||| ||||||||||||||| Sbjct 517944 CTAAACAATTTTTTTGTCTCCTTGTGGAGATTAGATACAGCTATCCTTGCAGCTAGAATA 518003 Query 78804 GCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAAC 78863 |||||||| | ||||| ||| || ||||| || ||||||| |||||| |||| ||| Sbjct 518004 GCATAATCGGCATGTTTTGTTGTCATTGTGGCAGCAGTTTCTGCAGCTAAATTATCCAAC 518063 Query 78864 TCTATAGTTGTGACCCCATTATATAGTCC-TTGAATA 78899 || | ||||| || || | || || || |||| || Sbjct 518064 TCAACCGTTGTCACTCCGCTGTAAAGACCGTTGATTA 518100 Score = 125 bits (138), Expect = 1e-23 Identities = 200/287 (70%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 77052 ATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGA 77111 |||||| ||| || || || |||| ||| | | || |||| | | || | || | | Sbjct 515705 ATAATTTCATTTTTCATTTCTTCATCCCAGAGATCTCTTGCTGTGAGATCTGTTAGCAAA 515764 Query 77112 TGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTA 77171 || || || | || || ||||| ||||| | || | | || || | ||| ||||| Sbjct 515765 TGTGGGTTCATGATCTGGAATTCGCCAGAGAGGACACGCCTTGTATAGACATTGCTGGTG 515824 Query 77172 TATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGT 77231 || | || | ||||||||||| |||| |||||| || ||||| ||||||||||| ||| Sbjct 515825 TAAGCCTCGATCGATTCATTGTTACCCAGAATTTGCGCTGTAGAGGCAGTTGGCATTGGT 515884 Query 77232 GCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAA 77291 || | | |||| |||| || |||||| | |||||| | ||||| | ||| Sbjct 515885 GCAATAAGTAAAGAGTTTCGGATTCCATGTTTAGCTATTTTAGCCTTTAGTGCTGCCCAG 515944 Query 77292 TCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 ||||||||||||| || ||| | ||| | ||| ||||||||||| Sbjct 515945 TCCCAAAGATCTGTCGGCGTAACGTTCCACATATCATATTGTAGAAT 515991 Score = 122 bits (134), Expect = 1e-22 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 78417 GTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGAT 78476 || || || || || ||||| ||||||| || | ||||||||| || ||||||||| Sbjct 517527 GTGGGGGAAGCGTGAGTAAAATATTTTTCTGACAATAGATTGTAAGTCTCAATAGCTTTG 517586 Query 78477 TCTATGTCCCATTG--ATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTT 78534 || || || || | |||||| || || || || ||||| || | |||||| ||||||| Sbjct 517587 TCGATATC--ATCGCCATGAATACCAACTGCGACGCGCATTAATAAATGCTGCGGTCTTT 517644 Query 78535 CAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAAT 78594 ||||| || ||| ||||||| |||||| | |||| ||||| || ||||||| Sbjct 517645 CAACCACTTTGCCATTAATTTTCAGCAAGTAACTTCGCTCCAGGGTTTTGAATCCAAAAT 517704 Query 78595 AGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATT 78634 |||| || ||||||| || |||||||| |||| || Sbjct 517705 AGTTATAGTTGAAGTCTCGATCATAAATAATGGCAGAGTT 517744 >seq142 Length=137952 Score = 93.3 bits (102), Expect = 6e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTC 48686 ||||| | ||| ||||||||| | |||||||| || || |||||||| || ||||| ||| Sbjct 56793 TTTGAGAGATCCACTTCTTCAACAGTCCAAAAAGAAGCTTCTGCTTTCTTGTACATTTTC 56734 Query 48687 CATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 || || || ||||||||||||||||||| || | ||||||||| Sbjct 56733 CAAATGTCTGGCCATTGGATTGGGAAAATAACGAAGCGTCTTGGATTTT 56685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694664267286080