Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 147 3e-30 seq142 86.0 9e-12 >seq2 Length=4278185 Score = 147 bits (162), Expect = 3e-30 Identities = 243/345 (70%), Gaps = 7/345 (2%) Strand=Plus/Plus Query 76118 ATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTA 76177 ||||| ||||||||||||||| ||||||| |||| ||||||||||| || || || || Sbjct 516340 ATACCGATAGGTCTATGTCTCATATTGGATCTTTCGGCTTCTGGAATTGGATAGTAGTTG 516399 Query 76178 ATATCTATAATTTTATT-GAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAG 76236 ||||| || ||||| || || | | || |||| | ||| ||| || |||||||| Sbjct 516400 ATATCGATGATTTTGTTCAAGTTATATG-CAACAATTTTGGTCACTTCTTTTAGTTTTTT 516458 Query 76237 AAAATCAAATTTTCCATCT---ATCACAAACATATTAAGAGCTATAGATGCTAGATTACA 76293 |||| | | |||| |||||||||| || | ||| || ||||| ||||| || Sbjct 516459 GAAATTGTAGGTCTTATCTGGGTTCACAAACATGTTGACAGCAATCGATGCAAGATTGCA 516518 Query 76294 AACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTT 76353 ||| || | |||| | ||| ||||| || || || || || || || || || || Sbjct 516519 AACCGCGATTTCATCGGGGCTGGAATATTCTACAATTTCGGTACAAAGGTTGCTGCATTT 516578 Query 76354 GATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACA-TGAGTCCTTATAAAGAACAA 76412 |||||||||| ||| || || ||| || ||||| ||| || ||||| || | Sbjct 516579 AATAGTTCCAACATTCTGCTGATTGGATTTGCGATTACAGTGA-TCTTTATACAGCATGT 516637 Query 76413 ACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGA 76457 | || ||||| || |||| |||||| | ||||| | | ||||| Sbjct 516638 AAGGTGTTCCGGTCTCAACCTGTGAGTTTATAATGGCTAACCAGA 516682 Score = 122 bits (134), Expect = 1e-22 Identities = 123/159 (77%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 77337 CGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAA 77396 ||||||| | ||||||||| |||||||| ||||| ||||| ||||| || |||||||||| Sbjct 517942 CGCTAAACAATTTTTTTGTCTCCTTGTGGAGATTAGATACAGCTATCCTTGCAGCTAGAA 518001 Query 77397 TTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTA 77456 | ||||| || | ||||| ||| || ||||| || ||||||| |||||| |||| | Sbjct 518002 TAGCATAATCGGCATGTTTTGTTGTCATTGTGGCAGCAGTTTCTGCAGCTAAATTATCCA 518061 Query 77457 ATTCTATAGTAGTAACTCCGTTATATAG-CCCTTGAATA 77494 | || | || || |||||| | || || || |||| || Sbjct 518062 ACTCAACCGTTGTCACTCCGCTGTAAAGACCGTTGATTA 518100 Score = 116 bits (128), Expect = 5e-21 Identities = 198/287 (69%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 75647 ATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGA 75706 |||||| ||| || || || |||| ||| | | ||| | || | | || | || | | Sbjct 515705 ATAATTTCATTTTTCATTTCTTCATCCCAGAGATCTCTTGCTGTGAGATCTGTTAGCAAA 515764 Query 75707 TGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTA 75766 || || || | || || ||||| ||||| | || | | || || | ||| ||||| Sbjct 515765 TGTGGGTTCATGATCTGGAATTCGCCAGAGAGGACACGCCTTGTATAGACATTGCTGGTG 515824 Query 75767 TATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGT 75826 || | || | ||||||||||| |||| |||||| || || || ||||| ||||| ||| Sbjct 515825 TAAGCCTCGATCGATTCATTGTTACCCAGAATTTGCGCTGTAGAGGCAGTTGGCATTGGT 515884 Query 75827 GCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAA 75886 || | | |||| |||| || |||||| | |||||| | ||||| | ||| Sbjct 515885 GCAATAAGTAAAGAGTTTCGGATTCCATGTTTAGCTATTTTAGCCTTTAGTGCTGCCCAG 515944 Query 75887 TCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAAT 75933 ||||||||||||| || ||| | ||| | ||| ||||||||||| Sbjct 515945 TCCCAAAGATCTGTCGGCGTAACGTTCCACATATCATATTGTAGAAT 515991 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 77012 GTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCT 77071 || || || || ||||| || ||||||| || | ||||||||| || |||||| || Sbjct 517527 GTGGGGGAAGCGTGAGTAAAATATTTTTCTGACAATAGATTGTAAGTCTCAATAGCTTTG 517586 Query 77072 TCTATATCCCATTG--ATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTT 77129 || ||||| || | |||||| || || ||||| ||||| || | |||||| |||| || Sbjct 517587 TCGATATC--ATCGCCATGAATACCAACTGCGACGCGCATTAATAAATGCTGCGGTCTTT 517644 Query 77130 CTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAAT 77189 | || || ||| ||||||| |||||| | |||| ||||| || ||||||| Sbjct 517645 CAACCACTTTGCCATTAATTTTCAGCAAGTAACTTCGCTCCAGGGTTTTGAATCCAAAAT 517704 Query 77190 AGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTC 77238 |||| || ||||||| || |||||||| | || || | | |||| Sbjct 517705 AGTTATAGTTGAAGTCTCGATCATAAATAATGGCAGAGTTCAATCTGTC 517753 >seq142 Length=137952 Score = 86.0 bits (94), Expect = 9e-12 Identities = 156/228 (68%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||| ||||| ||| | ||| || || || ||||||||||| ||||| || || | Sbjct 57452 CTTCGTCTCTGGAAATGAGTTCATTGCTGAAAGTTAGCCCAGGCATAAGTCCGCGTTTCT 57393 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| ||||| || || ||| || || || || |||||||| || || || | Sbjct 57392 TCAGCCAGAATATGGCAGCAAAACTACCGCTGAAAAAGATTCCTTCTACTGCTGCAAAGG 57333 Query 46772 CGACAAGTCTCTCTCCGTAACTGGC---ATCATTATGAATCCACCTTTGAGCCCAATCAG 46828 | || | || |||||| || | || ||||| || ||||| || ||||| | || Sbjct 57332 CCACGACTCGCTCTCCAAAATTTGCACTATCATGATTGATCCAATTTATTGCCCAGTTAG 57273 Query 46829 CCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGT 46876 | ||||| |||||||| | | || || ||||| || | ||||| Sbjct 57272 CTTTTTTTGCGACACAAGGTAGGTTCTCGATGGCATTGAACAAAAAGT 57225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712929748103040