Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq223 134 3e-26 seq496 105 2e-17 >seq223 Length=3708094 Score = 134 bits (148), Expect = 3e-26 Identities = 156/209 (75%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || || || || || ||||| || | || || | ||||| || | Sbjct 239137 CAAG-TGCAGCGTGGATTCCTTCTGAATATTGTAGTCCGACAACGTGCGACCATCCTCCA 239079 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||| |||||||| | |||||| || | || ||||||||| || || |||| Sbjct 239078 GCTGTTTGCCGGCAAAGATAAGACGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAA 239019 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| ||| | || | |||| || ||||||||| |||||||||||||||| Sbjct 239018 TTTTAGCTTTCACATTTTCGATCGTGTCAGAGGCCTCTACTTCCAGAGTAATAGTTTTGC 238959 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 |||| | ||||| ||||||| ||||||| Sbjct 238958 CCGTCAATGTCTTAACGAAGATCTGCATT 238930 Score = 125 bits (138), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||||||||||||||| || || || || || || |||||||| || | || || | | Sbjct 241403 AGTCTGAGGACAAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCCGACAAGGTACGC 241344 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| | ||||| ||||||||||| | || |||||||| | | |||||| | Sbjct 241343 CCATCTTCCAATTGCTTT--CCGGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCCT 241286 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| || || || ||| ||| || |||| | | |||| || || || || || | Sbjct 241285 CCTTGTCCTGGATCTTTGCTTTCACGTTCTCGATGGTGTCGGATGCTTCAACCTCCAGGG 241226 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| || || | |||||| ||||||| ||||| Sbjct 241225 TGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCAT 241186 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||||||| || | ||||| || || || |||||||||||||| || | | || | Sbjct 238692 AGTCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGAAAGGGTGCGG 238633 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || ||||| | ||| || || || || | ||||||||| |||| | |||||| || Sbjct 238632 CCGTCTTCCAATTGTTTTCCTGCAAAAATCAACCTCTGCTGATCCGGAGGGATTCCCTCT 238573 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || ||| ||||| |||| | | |||| ||| ||| || || || || Sbjct 238572 TTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCCTCAACCTCGAGGGTG 238513 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| |||||||| || ||||| |||| |||||| Sbjct 238512 ATCGTTTTCCCCGTGAGGGTTTTCACAAAGATCTGCAT 238475 Score = 118 bits (130), Expect = 2e-21 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | |||||| || || ||||| ||||||||||| || | | || | Sbjct 238921 GAGACGGAGGACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCG 238862 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| | ||||| ||||| ||||| || ||||||||||| | | |||||| Sbjct 238861 GCCATCTTCCAATTGCTTT--CCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCC 238804 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || |||||| | || | | || ||| || || || ||| Sbjct 238803 TCCTTGTCCTGGATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCGACATCGAGA 238744 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || | |||||| ||||||| |||||| Sbjct 238743 GTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATCTGCAT 238703 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| || || || ||||| ||||||||||| |||| | || | ||||| Sbjct 241625 AGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCC 241566 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||| ||||| || | ||| ||||| | || |||||||| || || Sbjct 241565 TCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGAATTCCTTCTTTGTCC 241506 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||| ||| | || | | |||| || || ||||| || || || ||| Sbjct 241505 TGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAACTTCCAGGGTGATGGTT 241446 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || || ||||||| ||||| Sbjct 241445 TTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||| | || || || ||||| ||||||||||||| || || | Sbjct 239833 GAGACGGAGAACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGACAAGGTGCG 239774 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||||||| ||| || || || || | ||||||||||| | | ||||| || Sbjct 239773 CCCATCTTCTAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGAATTCCCTC 239714 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || |||||||| ||| || ||| | || | | |||| || || ||||| | || Sbjct 239713 TTTGTCTTGAATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGACTTCCAAGGT 239654 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || | ||||||||| || | |||||| Sbjct 239653 GATAGTCTTACCGGTTAAAGTCTTCACAAAAATCTGCAT 239615 Score = 109 bits (120), Expect = 1e-18 Identities = 152/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || ||||| ||||||||||| |||| | || | |||||||| | Sbjct 241164 CAAG-TGAAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCCA 241106 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| ||||| ||||| || ||||||||||| | | |||||| ||||| || || Sbjct 241105 ATTGCTTT--CCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTG 241048 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || || ||| |||| | | || || || ||||| || || || ||||| Sbjct 241047 GATCTTAGCCTTCACATTCTCGATAGTATCAGATGCTTCGACTTCCAGGGTGATGGTTTT 240988 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || |||||||| || |||| ||||| Sbjct 240987 GCCGGTCAGAGTCTTGACAAAGATTTGCAT 240958 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || |||||||| || |||||||||||||| |||| || || | ||||| || | Sbjct 239365 CAAG-TGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGCCATCCTCCA 239307 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| ||||| |||||||| | ||| || || | | ||||||||| || || |||| Sbjct 239306 ATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCTTTGTCCTGAA 239247 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| |||||| | || | | || || || ||||| | ||||| || || | Sbjct 239246 TTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGACTTCCAAGGTAATTGTCTTTC 239187 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||| | ||||| Sbjct 239186 CGGTCAAGGTCTTTACGAATATTTGCAT 239159 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | |||||||||||| || || ||||| ||||| || | || || | ||||| Sbjct 239599 GAGAACTAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCAGACAAGGTGCGACCATC 239540 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| | ||| |||||||| || | || || ||||| | | ||| ||||| || || Sbjct 239539 TTCCAACTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGGGGGATGCCTTCTTTATC 239480 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| ||| || || | || | | |||| || ||| ||||| | || || || Sbjct 239479 CTGAATCTTTGCCTTAACGTTTTCAATGGTGTCGGAGGCCTCGACTTCCAAGGTGATTGT 239420 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||| || || ||||| || || || | |||||| Sbjct 239419 TTTACCGGTAAGAGTTTTGACAAAAATTTGCATT 239386 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||||||||| || ||||| || ||||| |||| || || | Sbjct 240061 GAGACGGAGAACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTGCG 240002 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | ||| ||||| ||||| | || || || || | | |||||||| Sbjct 240001 ACCATCTTCCAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTC 239942 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || || || |||||| |||||| | || | | |||| || ||| ||||| | || Sbjct 239941 TTTGTCCTGGATTTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGT 239882 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || | || ||||| || | ||||| Sbjct 239881 GATGGTCTTACCAGTTAACGTTTTCACAAAAATTTGCAT 239843 >seq496 Length=1672140 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||| ||||| || | | ||| | ||||||||||| ||| || || ||||| Sbjct 1564665 TTCTGGATATTGTAGTCAGAGAGAGTACGACCATCTTCTAGTTGTTTACCAGCAAAGATC 1564606 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | |||||||| || | | ||||||||||| || || || || |||||| | || Sbjct 1564605 AATCTCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTTTCA 1564546 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | || ||| ||| || ||||| || || ||||| ||||| || |||||||||||| Sbjct 1564545 ATAGTATCGGAAGCCTCCACCTCAAGGGTGATGGTTTTACCCGTCAGGGTCTTCACGAAG 1564486 Query 152097 ACCTGCAT 152104 | |||||| Sbjct 1564485 ATCTGCAT 1564478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153813083102262