Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq223 118 9e-22 >seq223 Length=3708094 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 ||||||||||||||||||||| | ||||| ||||| || ||| ||||| || || Sbjct 239386 AATGCAAATTTTTGTCAAAACTCTTACCGGTAAAACAATCACCTTGGAAGTCGAGGCCTC 239445 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | ||| | || || ||| ||| || ||||||||| | ||| || || Sbjct 239446 CGACACCATTGAAAACGTTAAGGCAAAGATTCAGGATAAAGAAGGCATCCCCCCAGACCA 239505 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 |||||| | |||| || |||||||| ||||||||| | || || | || || || Sbjct 239506 ACAAAGATTAATTTTCGCCGGCAAACAGTTGGAAGATGGTCGCACCTTGTCTGACTACAA 239565 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| || || |||||||| || |||||||| | |||||||| || || Sbjct 239566 TATCCAGAAGGAATCTACTCTTCATTTAGTTCTCCGTCTGCGTGGAGG 239613 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| |||||||| || || || ||||| ||| ||||| || || | Sbjct 239843 ATGCAAATTTTTGTGAAAACGTTAACTGGTAAGACCATCACCTTGGAAGTCGAGGCCTCC 239902 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | | | | || ||| |||||| ||||||||||| ||||| |||||| Sbjct 239903 GACACCATCGAAAACGTCAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAA 239962 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||||| | || | ||| || ||||| ||||||||| | || || |||| || ||| Sbjct 239963 CAAAGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGTCGCACCTTGTCCGACTACAAT 240022 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| |||||||| || || || || | ||||| || || || Sbjct 240023 ATTCAAAAGGAATCTACTCTTCACTTGGTTCTCCGTCTCCGTGGGGG 240069 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || || || || |||||||| || || |||||| ||||| ||| || | Sbjct 239159 ATGCAAATATTCGTAAAGACCTTGACCGGAAAGACAATTACCTTGGAAGTCGAAGCCTCC 239218 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || || |||||| ||||||||||| | || |||||| Sbjct 239219 GATACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAAGAAGGAATCCCACCAGATCAA 239278 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | ||||| | ||| || ||||||||||| ||| || || |||| || || Sbjct 239279 CAGCGTCTTATCTTTGCCGGTAAACAATTGGAGGATGGCCGTACCTTGTCCGACTACAAC 239338 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| |||||||| || || || || | ||||| || ||||| Sbjct 239339 ATCCAAAAGGAATCTACTCTCCACTTGGTTCTTCGTCTACGTGGTGG 239385 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| |||||||||||||| |||||||| |||||||| ||| ||||| ||| | | Sbjct 240730 ATGCAGATTTTTGTCAAAACTTTGACCGGTAAAACCATCACCCTGGAAGTTGAAGCATCC 240789 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || ||| || || |||||||| || |||| || ||| Sbjct 240790 GACACCATTGAGAACGTGAAAGCGAAGATCCAGGACAAAGAGGGGATTCCACCAGACCAA 240849 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | | |||| || || || || ||||||||| | || || |||| |||||| Sbjct 240850 CAGCGATTAATTTTCGCCGGTAAGCAGTTGGAAGATGGTCGCACCTTGTCCGACTATAAT 240909 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| |||||||| || || || || | ||||| ||||| || Sbjct 240910 ATTCAAAAGGAATCTACCCTCCACTTGGTTCTCCGTCTCCGCGGAGG 240956 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| || |||||||| | || ||||||||||| ||| ||||| ||| | Sbjct 241414 ATGCAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACCCTGGAAGTTGAAGCATCG 241473 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 || | ||| | || ||| |||||| ||||||||||| |||| || ||| Sbjct 241474 GACACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGAATTCCGCCAGACCAA 241533 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || | || || | ||| |||||||| |||| ||| | || || |||| || || Sbjct 241534 CAGCGTCTCATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACCCTGTCCGACTACAAC 241593 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || |||||||| || || ||||| || |||| || || ||||| Sbjct 241594 ATCCAGAAAGAATCAACCCTCCATTTGGTTCTGCGGCTCCGAGGTGG 241640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421808516489872