Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq223 138 8e-28 seq496 100 2e-16 >seq223 Length=3708094 Score = 138 bits (152), Expect = 8e-28 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||||| | ||||| |||||| ||| ||||||||||||||||| || Sbjct 238705 CATGCCTCCGCGAAGTCTGAGCACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTC 238646 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| |||| || || || ||||| ||||| | ||||||||| | Sbjct 238645 CGAAAGGGTGCGGCCGTCTTCCAATTGTTTTCCTGCAAAAATCAACCTCTGCTGATCCGG 238586 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | || || || ||| ||||| ||| | | |||| | |||||||||| | | Sbjct 238585 AGGGATTCCCTCTTTGTCCTGGATCTT-TGCCTTGACGTTCTCAATGGTGTCGGAAGCCT 238527 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 | ||||| | || ||||| || ||||||||||| ||||| ||||| |||||||| Sbjct 238526 CAACCTCGAGGGTGATCGTTTTCCCCGTGAGGGTTTTCACAAAGATCTGCATGAT 238472 Score = 120 bits (132), Expect = 2e-22 Identities = 172/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| |||||| | || || || || ||| ||||| || |||||||| Sbjct 241419 TTGCATACCACCTCGCAGTCTGAGGACAAGATGGAGTGTGGATTCCTTCTGAATGTTGTA 241360 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 || | | || | ||| | || |||| ||||| ||||| |||||||| | ||||| | Sbjct 241359 GTCCGACAAGGTA-CGCCCATCTTCCAATTGCTTTCCGGCGAAGATCAATCTTTGCTGGT 241301 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCG 44281 ||| || | || ||||| ||| ||||| ||||| | |||| | |||||||||| Sbjct 241300 CTGGTGGGATTCCCTCCTTGTCCTGGATCTT-TGCTTTCACGTTCTCGATGGTGTCGGAT 241242 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||| ||||||| || || || || || || | ||||| ||||||||||||||| Sbjct 241241 GCTTCAACCTCCAGGGTGATGGTTTTACCGGTCAAAGTCTTTACGAAGATTTGCATG 241185 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| ||| || || ||||||||||||||||| |||| | || | || | || || Sbjct 239367 ACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTACGGC-CATCCTC 239309 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || || || ||||||||||| | |||||| ||||||| || | ||||| || ||| Sbjct 239308 CAATTGTTTACCGGCAAAGATAAGACGCTGTTGATCTGGTGGGATTCCTTCTTTGTCCTG 239249 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || ||| | || | || || |||| || ||| || |||| ||||| ||||| Sbjct 239248 AATTTTAGCCTTGACATTTTCAATAGTATCGGAGGCTTCGACTTCCAAGGTAATTGTCTT 239189 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| || | |||||| ||||| ||||||||| Sbjct 239188 TCCGGTCAAGGTCTTTACGAATATTTGCATG 239158 Score = 104 bits (114), Expect = 2e-17 Identities = 166/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || || | |||| | |||| ||| |||||| ||||| || || || Sbjct 239167 TATTTGCATGCCTCCACGAAGTCGAAGAACCAAGTGCAGCGTGGATTCCTTCTGAATATT 239108 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 ||| || | | ||| | || |||||||| || ||||||||||| | ||||||||| Sbjct 239107 GTAGTCCGACAACGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATAAGACGCTGCTG 239048 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGC 44280 ||||| || | ||||| || ||| || || |||| || | || ||||| | Sbjct 239047 ATCTGGCGGGATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCGATCGTGTCAGA 238988 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || |||| ||||| || || ||||| | ||||| |||||||| ||||| Sbjct 238987 GGCCTCTACTTCCAGAGTAATAGTTTTGCCCGTCAATGTCTTAACGAAGATCTGCAT 238931 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || || ||||||||||| |||| || ||| | || |||||||| || ||||||||| Sbjct 241604 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAG 241545 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | |||||| || |||| || | ||||| || ||| || || |||| || Sbjct 241544 ATGAGACGCTGTTGGTCTGGCGGAATTCCTTCTTTGTCCTGAATTTTAGCTTTCACATTT 241485 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | | ||| || |||| || || || || || || ||||| || ||| Sbjct 241484 TCAATGGTGTCCGATGCTTCAACTTCCAGGGTGATGGTTTTGCCAGTTAGGGTTTTGACG 241425 Query 44327 AAGATTTGCAT 44337 ||||||||||| Sbjct 241424 AAGATTTGCAT 241414 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||||| ||||||||||||| | || | |||| | || || || || || || ||||| Sbjct 239805 TCCTTTTGAATGTTGTAATCGGACAAGGT-GCGCCCATCTTCTAGTTGTTTGCCAGCAAA 239747 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 ||||| | |||||| |||| || | || || || || ||||| ||||| | Sbjct 239746 AATCAATCTCTGCTGGTCTGGTGGAATTCCCTCTTTGTCTTGAATCTTTGCCTTCACATT 239687 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | |||||||||| || ||| || |||| || || ||||| || || | |||||||| Sbjct 239686 TTCGATGGTGTCGGAGGCTTCGACTTCCAAGGTGATAGTCTTACCGGTTAAAGTCTTCAC 239627 Query 44326 GAAGATTTGCAT 44337 || || ||||| Sbjct 239626 AAAAATCTGCAT 239615 Score = 100 bits (110), Expect = 2e-16 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| |||||| || |||||||| || ||||| |||| | || || || | || || Sbjct 240051 ACCAAGTGAAGAGTAGATTCCTTTTGAATATTGTAGTCGGACAAGGTG-CGACCATCTTC 239993 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||| || |||||||||||||| | || ||||||| || | ||||| || ||| Sbjct 239992 CAACTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGGGGAATTCCTTCTTTGTCCTG 239933 Query 44248 TATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 || || ||||| | | || | |||||||||| || || || |||| || || |||| Sbjct 239932 GAT-TTTTGCTTTGACGTTTTCGATGGTGTCGGAGGCCTCGACTTCCAAGGTGATGGTCT 239874 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | || ||||| || |||||||| Sbjct 239873 TACCAGTTAACGTTTTCACAAAAATTTGCAT 239843 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || || || ||||||||||| |||| ||| ||| | || ||| Sbjct 241166 ACCAAGTGAAGGGTCGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCC 241107 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||||| ||||||||||||| | |||||| |||| || | || ||||| ||| Sbjct 241106 AATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGG 241047 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | || || || | | ||| || |||| || || || || Sbjct 241046 ATCTTAGCCTTCACATTCTCGATAGTATCAGATGCTTCGACTTCCAGGGTGATGGTTTTG 240987 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| || ||||||||||| Sbjct 240986 CCGGTCAGAGTCTTGACAAAGATTTGCAT 240958 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||||| ||| || || ||||||||||| || | || ||| | || ||| Sbjct 238911 ACCAAATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCTTCC 238852 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||||| ||||||||||||| | |||||| |||| || | || ||||| ||| Sbjct 238851 AATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCCTGG 238792 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | || | || || |||| | ||| || || | || || ||||| Sbjct 238791 ATCTTAGCCTTGACATTTTCGATCGTATCGGAAGCTTCGACATCGAGAGTGATGGTCTTG 238732 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | ||||| |||||||| |||||| Sbjct 238731 CCGGTCAAAGTCTTTACGAAGATCTGCATG 238702 >seq496 Length=1672140 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||| ||||| || | ||| || | || || || || || || ||||||| Sbjct 1564667 CCTTCTGGATATTGTAGTCAGAGAGAGTACGACCATCTTCTAGTTGTTTACCAGCAAAGA 1564608 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 |||| | ||||||||| | || | |||||||| ||| ||||| ||| | || Sbjct 1564607 TCAATCTCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTTT 1564548 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | || || |||| | |||||||| | || || || || ||||| ||||||||||||| Sbjct 1564547 CAATAGTATCGGAAGCCTCCACCTCAAGGGTGATGGTTTTACCCGTCAGGGTCTTCACGA 1564488 Query 44328 AGATTTGCAT 44337 |||| ||||| Sbjct 1564487 AGATCTGCAT 1564478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359988109786074