Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq223 176 1e-38 >seq223 Length=3708094 Score = 176 bits (194), Expect = 1e-38 Identities = 170/216 (79%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || || ||||| |||||||| ||||| ||| || ||| Sbjct 241189 CAAATCTTCGTAAAGACTTTGACCGGTAAAACCATCACCCTGGAGGTTGAAGCATCCGAC 241248 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| |||||| |||||||| || |||||||| || ||||||||| Sbjct 241249 ACCATCGAGAACGTGAAAGCAAAGATCCAGGACAAGGAGGGAATCCCACCAGACCAGCAA 241308 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||||||||| || | |||||||| | || |||| | || || ||| | Sbjct 241309 AGATTGATCTTCGCCGGAAAGCAATTGGAAGATGGGCGTAC-CTTGTCGGACTACAACAT 241367 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || ||||| ||||| |||||||| | ||||| Sbjct 241368 TCAGAAGGAATCCACACTCCATCTTGTCCTCAGACT 241403 Score = 165 bits (182), Expect = 2e-35 Identities = 165/213 (77%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 177916 AAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAA 177975 |||| | || || || |||||||| ||||| || |||||||||||||||||||| || Sbjct 238470 AAATCATGCAGATCTTTGTGAAAACCCTCACGGGGAAAACGATCACCCTCGAGGTTGAGG 238529 Query 177976 GCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGG 178035 || |||||||| ||||||||||| |||||| ||||||||||| ||||||||||||| Sbjct 238530 CTTCCGACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGAATCCCTCCGG 238589 Query 178036 ACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATT 178095 | ||||| | | || || || |||||||| | ||||| || | || ||| | || | Sbjct 238590 ATCAGCAGAGGTTGATTTTTGCAGGAAAACAATTGGAAGACGGCCGCACCCTTTCGGACT 238649 Query 178096 ATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | ||| ||||||| ||||| || || || |||| Sbjct 238650 ACAACATCCAAAAGGAATCCACCCTTCA-CTTG 238681 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || || || ||||| |||||||| || || ||| || ||| Sbjct 241417 CAAATCTTCGTCAAAACCCTAACTGGCAAAACCATCACCCTGGAAGTTGAAGCATCGGAC 241476 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || |||||||||||||||||||| || || ||||| || Sbjct 241477 ACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGAATTCCGCCAGACCAACAG 241536 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| |||||||| || ||||| | || || |||| || ||| || Sbjct 241537 CGTCTCATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACCCTGTCCGACTACAACATC 241596 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || ||||||||||| || ||| | ||| || | ||| || Sbjct 241597 CAGAAAGAATCAACCCTCCATTTGGTTCTGCGGCTCCGA 241635 Score = 152 bits (168), Expect = 1e-31 Identities = 160/208 (77%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||||||| | || || || || |||||| | || || ||| || ||| Sbjct 240074 CAAATTTTTGTGAAAACTTTAACTGGTAAGACCATCACCTTGGAAGTCGAAGCTTCTGAC 240133 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || ||||||||||| |||||||||||||| || ||||| ||| Sbjct 240134 ACCATTGAGAATGTGAAGGCGAAGATTCAGGATAAAGAAGGAATCCCCCCAGACCAACAA 240193 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||| || |||||| | |||||||| | || |||| |||| |||||| | Sbjct 240194 AGATTAATCTTCGCGGGTAAACAGTTGGAAGATGGTCGCAC-CTTGTCCGACTATAACAT 240252 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130 || || ||||| || ||||| | ||| Sbjct 240253 TCAGAAGGAATCCACCTTGCATTTGGTT 240280 Score = 147 bits (162), Expect = 5e-30 Identities = 159/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| || || ||||| |||||| | || || || ||| ||| Sbjct 239390 CAAATTTTTGTCAAAACTCTTACCGGTAAAACAATCACCTTGGAAGTCGAGGCCTCCGAC 239449 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || |||||||||||| |||||||| ||||| || ||||| ||| Sbjct 239450 ACCATTGAAAACGTTAAGGCAAAGATTCAGGATAAAGAAGGCATCCCCCCAGACCAACAA 239509 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || |||||||| |||||| | |||||||| | || |||| | || || || | Sbjct 239510 AGATTAATTTTCGCCGGCAAACAGTTGGAAGATGGTCGCAC-CTTGTCTGACTACAATAT 239568 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130 ||| || ||||| || || ||| | ||| Sbjct 239569 CCAGAAGGAATCTACTCTTCATTTAGTT 239596 Score = 145 bits (160), Expect = 2e-29 Identities = 160/209 (77%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| |||||||| | || || || || |||||| | || || || ||| ||| Sbjct 239846 CAAATTTTTGTGAAAACGTTAACTGGTAAGACCATCACCTTGGAAGTCGAGGCCTCCGAC 239905 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| ||| || ||||||||||||||||| || || || || ||| Sbjct 239906 ACCATCGAAAACGTCAAAGCAAAAATCCAGGACAAAGAAGGAATTCCCCCAGATCAACAA 239965 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| ||||| |||||| | |||||||| | || |||| |||| || || | Sbjct 239966 AGATTGATCTTTGCCGGTAAACAGTTGGAAGATGGTCGCAC-CTTGTCCGACTACAATAT 240024 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| ||||| || || || |||| || Sbjct 240025 TCAAAAGGAATCTACTCTTCA-CTTGGTT 240052 Score = 141 bits (156), Expect = 2e-28 Identities = 159/209 (76%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || |||||| | || || ||||| |||||||| || || ||| || ||| Sbjct 240733 CAGATTTTTGTCAAAACTTTGACCGGTAAAACCATCACCCTGGAAGTTGAAGCATCCGAC 240792 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| ||| ||||| ||||||||||| || || || || ||||| || Sbjct 240793 ACCATTGAGAACGTGAAAGCGAAGATCCAGGACAAAGAGGGGATTCCACCAGACCAACAG 240852 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||| | || |||||||| || ||| | |||||||| | || |||| |||| ||||| | Sbjct 240853 CGATTAATTTTCGCCGGTAAGCAGTTGGAAGATGGTCGCAC-CTTGTCCGACTATAATAT 240911 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| ||||| || || || |||| || Sbjct 240912 TCAAAAGGAATCTACCCTCCA-CTTGGTT 240939 Score = 138 bits (152), Expect = 3e-27 Identities = 157/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| ||| | || || || || |||||| | || || ||| ||| ||| Sbjct 239618 CAGATTTTTGTGAAGACTTTAACCGGTAAGACTATCACCTTGGAAGTCGAAGCCTCCGAC 239677 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||||||| |||||||| ||||| || || |||||||| Sbjct 239678 ACCATCGAAAATGTGAAGGCAAAGATTCAAGACAAAGAGGGAATTCCACCAGACCAGCAG 239737 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || || || || ||||| || |||||||| | || |||| ||||||| ||| | Sbjct 239738 AGATTGATTTTTGCTGGCAAACAACTAGAAGATGGGCGCAC-CTTGTCCGATTACAACAT 239796 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130 ||||| ||||| || ||||| | ||| Sbjct 239797 TCAAAAGGAATCCACCTTGCATTTAGTT 239824 Score = 127 bits (140), Expect = 5e-24 Identities = 156/209 (75%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || ||||| || || ||| | || || ||| ||| || Sbjct 239162 CAAATATTCGTAAAGACCTTGACCGGAAAGACAATTACCTTGGAAGTCGAAGCCTCCGAT 239221 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| || ||||||||||||||||||||||| || || || || Sbjct 239222 ACTATTGAAAATGTCAAGGCTAAAATTCAGGACAAAGAAGGAATCCCACCAGATCAACAG 239281 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || |||||||| ||||| ||||| | || ||||| | || |||| |||| || ||| | Sbjct 239282 CGTCTTATCTTTGCCGGTAAACAATTGGAGGATGGCCGTAC-CTTGTCCGACTACAACAT 239340 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||||| ||||| || || || |||| || Sbjct 239341 CCAAAAGGAATCTACTCTCCA-CTTGGTT 239368 Score = 123 bits (136), Expect = 6e-23 Identities = 153/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || ||||| || || || || || || ||| ||| Sbjct 238934 CAGATCTTCGTTAAGACATTGACGGGCAAAACTATTACTCTGGAAGTAGAGGCCTCTGAC 238993 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| || ||||||||||||||||||||||| || || ||||| Sbjct 238994 ACGATCGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGAATCCCGCCAGATCAGCAG 239053 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| ||||| |||||||| || ||||| | || | | || || || | Sbjct 239054 CGTCTTATCTTTGCCGGCAAACAGCTGGAGGATGGTCGCACGTTGTCGGACTACAATATT 239113 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || ||||| || ||||| |||| || Sbjct 239114 CAGAAGGAATCCACGCTGCA-CTTGGTT 239140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723149295268