Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Athalia_20rosae_20[refseq_20GCF_5F000344095.1_202013-03-05] 522 sequences; 163,837,890 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq223 107 2e-18 seq496 82.4 7e-11 >seq223 Length=3708094 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||| || || || ||||| ||||| ||||||||||| Sbjct 240956 CCTCCGCGGAGACGGAGAACCAAGTGGAGGGTAGATTCCTTTTGAATATTATAGTCGGAC 240897 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || | |||||| |||||||| || | ||||||||||| | ||| Sbjct 240896 AAGGTGCGACCATCTTCCAACTGCTTACCGGCGAAAATTAATCGCTGTTGGTCTGGTGGA 240837 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814 | | ||| |||||| || | || |||| ||| | | |||||| | || || Sbjct 240836 ATCCCCTCTTTGTCC-TGGATCTTCGCTTTCACGTTCTCAATGGTGTCGGATGCTTCAAC 240778 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || |||||||| |||| || || || ||||||||||| Sbjct 240777 TTCCAGGGTGATGGTTTTACCGGTCAAAGTTTTGACAAAAATCTGCAT 240730 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || ||| |||||||||||||| ||||| || | ||| ||| | || || Sbjct 241394 ACAAGATGGAGTGTGGATTCCTTCTGAATGTTGTAGTCCGACAAGGTACGCCCATCTTCC 241335 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | ||||| |||||||| |||| | || ||||| | || | | |||||||||| || Sbjct 241334 AATTGCTTTCCGGCGAAGATCAATCTTTGCTGGTCTGGTGGGATTCCCTCCTTGTCC-TG 241276 Query 41774 ATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | ||||||| ||| | | |||||| | || ||||||| || || ||||| Sbjct 241275 GATCTTTGCTTTCACGTTCTCGATGGTGTCGGATGCTTCAACCTCCAGGGTGATGGTTTT 241216 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| |||| ||||||||||| || |||||| Sbjct 241215 ACCGGTCAAAGTCTTTACGAAGATTTGCATG 241185 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | |||| ||||||||| ||||||||||| || ||||| || Sbjct 239158 GCCTCCACGAAGTCGAAGAACCAAGTGCAGCGTGGATTCCTTCTGAATATTGTAGTCCGA 239099 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGG 41753 | ||||| | || || ||||| |||||||| || || || ||||| || || |||| Sbjct 239098 CAACGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATAAGACGCTGCTGATCTGGCGG 239039 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 || || || |||||| ||| |||| |||| || | | ||||| | ||| Sbjct 239038 GATTCCT-TCTTTGTCC-TGAATTTTAGCTTTCACATTTTCGATCGTGTCAGAGGCCTCT 238981 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || ||||| ||||||| ||||| ||||| |||||||| Sbjct 238980 ACTTCCAGAGTAATAGTTTTGCCCGTCAATGTCTTAACGAAGATCTGCAT 238931 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | |||| ||| || || || ||||| ||||| |||||||| Sbjct 241640 CCACCTCGGAGCCGCAGAACCAAATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAC 241581 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||| |||||||| || || || ||||||||||| | ||| Sbjct 241580 AGGGTGCGACCATCCTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGTTGGTCTGGCGGA 241521 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||||| ||| |||| |||| || | | ||||| | || || Sbjct 241520 ATTCCTTCTTTGTCC-TGAATTTTAGCTTTCACATTTTCAATGGTGTCCGATGCTTCAAC 241462 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||| || || || || || ||||| || ||||| Sbjct 241461 TTCCAGGGTGATGGTTTTGCCAGTTAGGGTTTTGACGAAGATTTGCAT 241414 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || || || || ||||| ||||| |||||||| Sbjct 241185 GCCTCCACGGAGACGAAGAACCAAGTGAAGGGTCGATTCTTTCTGGATGTTGTAGTCGGA 241126 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || | ||||| ||||| || ||||| | ||| ||||| | || Sbjct 241125 GAGGGTGCGGCCATCTTCCAATTGCTTTCCGGCAAAGATCAGTCTCTGCTGGTCTGGTGG 241066 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||||| | | ||| || | || || Sbjct 241065 GATTCCCTCCTTGTCCTGGATCTTAGCCTTCACATTCTCGATAGTATCAGATGCTTCGAC 241006 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || ||||| || ||||| ||||| || || || ||||| Sbjct 241005 TTCCAGGGTGATGGTTTTGCCGGTCAGAGTCTTGACAAAGATTTGCAT 240958 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || | ||| || || |||||||| || || ||||| || Sbjct 239613 CCTCCACGCAGACGGAGAACTAAATGAAGAGTAGATTCCTTCTGGATATTGTAGTCAGAC 239554 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || || | ||| ||||||||||| || | | |||||||| | ||| Sbjct 239553 AAGGTGCGACCATCTTCCAACTGTTTGCCGGCGAAAATTAATCTTTGTTGGTCTGGGGGG 239494 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || || || ||| ||| | ||||| | |||| | | |||||| | ||| || Sbjct 239493 ATGCCTTCTTTATCC-TGAATCTTTGCCTTAACGTTTTCAATGGTGTCGGAGGCCTCGAC 239435 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || |||||||| || || || || || ||||| ||||| Sbjct 239434 TTCCAAGGTGATTGTTTTACCGGTAAGAGTTTTGACAAAAATTTGCAT 239387 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || | ||||| ||| ||||| |||||||| || ||||| Sbjct 239841 CCCCCACGGAGACGGAGAACTAAATGCAAGGTGGATTCCTTTTGAATGTTGTAATCGGAC 239782 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||||| | || || || || ||||| || || |||| | ||| ||||| | ||| Sbjct 239781 AAGGTGCGCCCATCTTCTAGTTGTTTGCCAGCAAAAATCAATCTCTGCTGGTCTGGTGGA 239722 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||| ||||| ||| | ||||| | || | | |||||| | || || Sbjct 239721 ATTCCCTCTTTGTCT-TGAATCTTTGCCTTCACATTTTCGATGGTGTCGGAGGCTTCGAC 239663 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || ||||| || | ||||| || ||||||||||| Sbjct 239662 TTCCAAGGTGATAGTCTTACCGGTTAAAGTCTTCACAAAAATCTGCAT 239615 >seq496 Length=1672140 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| || || ||||| ||||| || || | || || || || || || || || | Sbjct 1564667 CCTTCTGGATATTGTAGTCAGAGAGAGTACGACCATCTTCTAGTTGTTTACCAGCAAAGA 1564608 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 ||| | ||| || || | |||| | ||||||||| ||| || ||| | Sbjct 1564607 TCAATCTCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATTTT 1564548 Query 41793 ACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 | ||| ||| | ||||||||| | || || |||||||||||||| ||||| |||| Sbjct 1564547 CAATAGTATCGGAAGCCTCCACCTCAAGGGTGATGGTTTTACCCGTCAGGGTCTTCACGA 1564488 Query 41853 AAATCTGCAT 41862 | |||||||| Sbjct 1564487 AGATCTGCAT 1564478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462300983466400