Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq15 113 3e-20 >seq15 Length=5896156 Score = 113 bits (124), Expect = 3e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||| || || || | | |||||| || || ||||||||||| | ||| || | Sbjct 3065504 CTTTGTATTCAGCACCAAAGTATCGCCACTGGAAACCGTACACAGGTCCCAAATCACCCT 3065445 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||||||| || ||| ||| || || | || || ||||| ||||||||| Sbjct 3065444 CCTCTCTGTCAGTGAAGCCACAGGAATCCAAGAAAGCTCGTGAACCATTTTCATCCCAAA 3065385 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACA 102212 |||| | || | || | |||||| | || |||||| ||||||||||||| | Sbjct 3065384 TGTGAATACCCTTGTCCGACAATTCTTTGGAATTTGTCGATCCTTTGATAAACCACAATA 3065325 Query 102213 GTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 ||||||||| || ||| ||| |||||| ||||| || | | |||||| Sbjct 3065324 GTTCTTCAATCACTGCTCGCCAGAATACTTGTTTAGTTGTCAGTAATGGAAA 3065273 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 ||| |||||||| |||||| | || | | ||||| || ||||||||||||||||| Sbjct 3065892 AGTAACATGAGCGATCATGTACGTCAGCAAGGAATATGACGCTATGTTAAATGGCACTCC 3065833 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 ||| ||||| || || ||||||||| || || ||| | | ||| | | || || Sbjct 3065832 TAAACCCATGTCTGCGCTTCTTTGATAAAGCTGCGTGGACAATTCTCCGTTATTTACGTA 3065773 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAAC--ATTC 101929 |||||| || ||| || |||||||| |||| || ||||| || || | |||| Sbjct 3065772 AAATTGTACCAAAGTATGGCACGGCGGCAATGCCATCTTTGGAATATC--AACCGGATTC 3065715 Query 101930 CAAGCACACATTAACATCCTTCTATC 101955 || || |||||| || | |||||| Sbjct 3065714 CAGGCTGACATTATAATACGTCTATC 3065689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361238713803836