Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq54 104 3e-17 seq73 100 3e-16 seq30 91.5 2e-13 >seq54 Length=1719504 Score = 104 bits (114), Expect = 3e-17 Identities = 187/269 (70%), Gaps = 6/269 (2%) Strand=Plus/Minus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 || ||||| || ||| | |||| | |||||||||| || || ||||| || ||||| Sbjct 1010903 CTGGACATCTGCTGATTATTAGTACAAGCATTAAATAGAGTTGGTGAAGCATGTGTAAAA 1010844 Query 54464 CATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 || ||| || || || ||| || || || || || || || || || |||||| Sbjct 1010843 TATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTATCAATGTCATTTTCATGAAT 1010785 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 || || || || | ||| ||||| || ||||| || || || ||||| || ||||| Sbjct 1010784 ACCAACAGCTACTCTCATCAACATATGTTGAGGCCTCTCGACTATCTTACCATTGATTTT 1010725 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGT 54640 ||||| ||| | | || | ||||||||||||| ||| || || ||||| || || Sbjct 1010724 CAGCAGGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAA--TCACGA 1010667 Query 54641 TCGTAAATAATAACTGAGTTGAGTTTATC 54669 ||||| || ||| | || | ||||| || Sbjct 1010666 TCGTATATTATAGCAGAATCCAGTTTCTC 1010638 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| || || || | ||||| ||| ||||||| ||| || | ||| ||||| Sbjct 1012639 TTCTTCATATCTTCGTCCCATAGACCTCTACTGGTTAAATCTCGCAGTAAATGTGGATTG 1012580 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | |||||||||||||||||| | || || ||||| || ||||||||||| Sbjct 1012579 ACAATGATAAATTCTCCAGACAATACGCGCCTCACATATATATTGCTTGTATACGGTTCA 1012520 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | || || || ||||| ||||| || || || || || || ||||||||||| | || Sbjct 1012519 ATGGATTCGTTGTTTCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 1012460 Query 53267 AAACTATTTCTAAGACCGT 53285 | | |||||| | |||| Sbjct 1012459 AGAGAATTTCTTACTCCGT 1012441 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 ||||||| ||| || ||||| ||||||||||| |||||| | ||||| || ||||| | Sbjct 1010427 CACTAAAACTTTTCTTGGTTTCCTTGTGTAGATTAGATACGTCAATTCTTGCAGCTAGTA 1010368 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | |||||||| ||||||| || | || || || |||| |||| |||| | || | Sbjct 1010367 TAGCATAATCAGGATGTTTAGTTGCCATTGTAGCAGCAGTTTCAGCTGCCAGATTATCAA 1010308 Query 54888 ATTCTACCGTTGTTACTCCATTATATA 54914 | || || ||||||||| ||||| Sbjct 1010307 GTATAACTGTAGTTACTCCAGAATATA 1010281 >seq73 Length=1005568 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 ||||||| | ||| ||||| || ||||||||||| |||| || |||||||| |||| Sbjct 745041 CACTAAAAACTTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGG 744982 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | |||||||| |||||||| || | ||| ||||| |||| |||| || | | |||| Sbjct 744981 TTGCATAATCTGGATGTTGATTAATCATAGTCGCTGCAGTTTCAGCTGCCAAATTATCCA 744922 Query 54888 ATTCTACCGTTGTTACTCCA 54907 |||| ||||| |||||| Sbjct 744921 ATTCGCTTGTTGTCACTCCA 744902 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 53416 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 53475 ||||| ||| ||||| || |||| || || ||||| | || || || || | | || Sbjct 746815 AGCTATTTCGCAACTGGCTTCTAGAGCGCCATAATAGAGAGTCTCAAAAATTTGAATGTT 746756 Query 53476 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 53535 || || | ||||| ||| ||||||||||| | | | |||||| || |||||||| Sbjct 746755 AAGTTCATTAGCTTCTTTGCTTTCAAATGGATATCTCATTAAAATAAATGCATCTGCTAA 746696 Query 53536 TCCTTGAACACCAATACC 53553 |||||| ||||||||||| Sbjct 746695 TCCTTGTACACCAATACC 746678 >seq30 Length=3857846 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/201 (70%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 24176 TTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC 24235 ||||||| || ||||| || ||||| | || || || || |||||||| |||| || Sbjct 1772001 TTCGTTGCTGAAGGTGAGACCTGGCATGACTCCTCGTTTCTTTAGCCAAAAAATGGCTGC 1772060 Query 24236 AAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA 24295 || ||| ||||| || || || ||||||||||| || | | | ||| | | Sbjct 1772061 GAAACTGCCACTGAAGAAGATACCCTCAACTGCCGCAAATGCGACTACACGTTCGGGAAA 1772120 Query 24296 ACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352 ||||| ||||| ||||| ||| ||||||| |||||||| || |||||||| Sbjct 1772121 CGTAGCGCTCTCATGATTGATCCAGTTTAATGCCCAATTAGCCTTCTTCTTGACACAAGG 1772180 Query 24353 CATTGTCTCTATAGCATTAAA 24373 | |||||| || |||||||| Sbjct 1772181 AAGTGTCTCAATCGCATTAAA 1772201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593700552569280