Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq14 109 5e-19 seq71 93.3 3e-14 >seq14 Length=6127344 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| | || || |||||||||||| |||| ||| | | Sbjct 6013986 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013927 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | | ||| |||||| || ||||| || | || ||||| Sbjct 6013926 AGACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 6013867 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | || || || || |||||||||||||||||| || |||| | |||| ||||| Sbjct 6013866 ACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACAA 6013807 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| || ||||| || |||||| |||| | || | |||||||| Sbjct 6013806 CATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCGTCTTCGAGGAGG 6013759 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| ||| | ||||| | || || |||||||||||| |||| ||| | | Sbjct 6013758 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013699 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | | ||| |||||| || ||||| || | || ||||| Sbjct 6013698 AGACACCATCGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATCA 6013639 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | || || || || ||||||||| |||||||| || |||| | | |||||||| Sbjct 6013638 ACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACAA 6013579 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||| ||||| || || ||| | || |||||| | || ||||| Sbjct 6013578 CATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGG 6013531 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || | ||||| | || || |||||||| ||| || |||| | | Sbjct 6014441 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 6014382 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| || || |||||||||||| | || ||||||| Sbjct 6014381 GACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 6014322 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | | |||||||| || || ||| | || ||| || |||| | | || ||||| Sbjct 6014321 CAACGTTTGATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACTCTTTCTGACTACAAC 6014262 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 ||||| ||||||||||| ||||| Sbjct 6014261 ATTCAGAAGGAATCTACGCTTCA 6014239 >seq71 Length=1082584 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 |||||| |||||| | |||||||| || || ||||||||||| || |||| || | || Sbjct 572979 AGATCAGCAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGCAGAACTTTGTCGGA 572920 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| ||||| || |||||||||||| | ||| | ||| | || || ||||| || Sbjct 572919 TTATAATATCCAGAAGGAATCTACTTTACACTTAGTGCTGCGCTTGCGAGGCGG 572866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410782601322104