Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq14 141 1e-28 seq30 109 6e-19 seq4 109 6e-19 >seq14 Length=6127344 Score = 141 bits (156), Expect = 1e-28 Identities = 163/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| ||||| || |||||||| ||| |||| |||||||| | Sbjct 6013986 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013927 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | ||||| | |||| ||||||| ||||||||||| || || |||| | Sbjct 6013926 AGACACCATCGAAAACG-TAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATC 6013868 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || || || | ||| |||||||| |||| || | | || || |||||||| Sbjct 6013867 AACAGCGTCTGATTTTCGCCGGCAAACAATTGGAAGATGGCAGAACTCTTTCCGACTACA 6013808 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| ||||| || ||||||| || || || |||| Sbjct 6013807 ACATTCAGAAAGAATCCACGCTTCACCTGGTTCTGCG 6013771 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| ||||| || |||||||| ||| |||| |||||||| | Sbjct 6013758 AATGCAAATTTTCGTGAAAACTCTCACTGGTAAAACCATTACCCTCGAAGTCGAAGCTTC 6013699 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | ||||| | |||| ||||||| ||||||||||| || || |||| | Sbjct 6013698 AGACACCATCGAAAACG-TAAAGGCCAAAATTCAGGACAAAGAGGGAATTCCACCGGATC 6013640 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || || || | ||| |||||||| ||||| || | | || || || |||| Sbjct 6013639 AACAGCGTCTGATTTTCGCCGGCAAACAACTGGAAGATGGCAGAACTCTTTCTGATTACA 6013580 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||| || || |||| || || |||| || || Sbjct 6013579 ACATCCAAAAAGAATCCACACTCCACTTAGTTTTACG 6013543 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || ||||| || || ||||| ||||| |||||| | || || ||||| | Sbjct 6014213 ATGCAGATCTTTGTAAAGACTCTTACGGGTAAAACTATCACCCTTGAAGTTGAAGCTTCT 6014154 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | || | || || | ||||||||||| || || | |||||| Sbjct 6014153 GACACAATAGAAAATGTAAAAGCTAAGATCCAAGACAAAGAGGGTATTCCTCCTGACCAG 6014094 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || || |||||| |||| |||| | || || |||||||||| Sbjct 6014093 CAACGTTTGATCTTTGCTGGTAAACAGTTGGAAGACGGCAGAACTCTTTCCGACTACAAC 6014034 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| || ||||||| ||||| || |||| Sbjct 6014033 ATTCAGAAAGAATCCACGCTTCATCTGGTTCTGCG 6013999 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || |||||||| ||||| || |||||||||||| | || || ||||| | Sbjct 6014441 ATGCAAATCTTTGTAAAAACCCTCACTGGAAAAACCATCACCCTTGAGGTGGAAGCTTCT 6014382 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||| | || || | || ||||| || || || | || || Sbjct 6014381 GACACTATCGAAAATGTCAAAGCTAAGATCCAAGATAAAGAAGGTATTCCTCCAGATCAA 6014322 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| || || || || || || || | | || || ||||||||| Sbjct 6014321 CAACGTTTGATCTTTGCTGGAAAGCAACTAGAGGATGGCAGAACTCTTTCTGACTACAAC 6014262 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || |||||||| | ||||| ||||| || |||| Sbjct 6014261 ATTCAGAAGGAATCTACGCTTCATCTTGTTCTGCG 6014227 >seq30 Length=3857846 Score = 109 bits (120), Expect = 6e-19 Identities = 160/223 (72%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 || || || || || ||||| | || || ||||| ||||||| | ||||| | | Sbjct 1772204 TTATTTAATGCGATTGAGACACTTCCTTGTGTCAAGAAGAAGGCTAATTGGGCATTAAAC 1772145 Query 117005 TGGATCGCCGGCA-GAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCG 117062 |||||| || ||||| || | || ||| || | || || || ||||| || | Sbjct 1772144 TGGATCAAT--CATGAGAGCGCTACGTTTCCCGAACGTGTAGTCGCATTTGCGGCAGTTG 1772087 Query 117063 AGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCA 117122 |||| ||||||| ||||||||||| ||||| |||||||| |||||||| || ||| Sbjct 1772086 AGGGTATCTTCTTCAGTGGCAGTTTCGCAGCCATTTTTTGGCTAAAGAAACGAGGAGTCA 1772027 Query 117123 TGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 |||| || || || ||||||||||| || ||||| | ||||| Sbjct 1772026 TGCCAGGTCTCACCTTCAGCAACGAACTTATCTCACGAGACGA 1771984 >seq4 Length=9433735 Score = 109 bits (120), Expect = 6e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || ||||| |||||||| ||| |||| || || ||| | Sbjct 6954565 ATGCAGATCTTCGTGAAAACCCTTACGGGTAAAACCATTACCCTCGAGGTAGAGGCCTCT 6954624 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||||| || || | ||||| ||||| || || | || || Sbjct 6954625 GATACTATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCGCCAGATCAA 6954684 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| ||| |||||||||||||| || | ||||| | ||| |||||| Sbjct 6954685 CAGCGACTCATCTTCGCCGGCAAACAGCTGGAGGATGGACGCACTTTGTCCGATTACAAC 6954744 Query 40870 ATCCAGAA 40877 ||||| || Sbjct 6954745 ATCCAAAA 6954752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515200935479360