Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq14 131 1e-25 seq4 125 6e-24 seq3 116 3e-21 >seq14 Length=6127344 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | || || || ||||||| ||| || |||||||| ||||||||||| Sbjct 6013530 ACCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGA 6013589 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| | ||| || || ||||| || ||| | || |||||||| ||||| || || Sbjct 6013590 AAGAGTTCTGCCATCTTCCAGTTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGG 6013649 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGA 118689 || ||||| ||||| |||||| || || | ||||| |||||| | ||| |||| Sbjct 6013650 AATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCT-TCGA 6013708 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| ||| | ||||| || || |||||||| || ||||| ||||| Sbjct 6013709 CTTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013757 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || |||| ||| | || || ||||| ||||||||||| ||| Sbjct 6013759 CCTCCTCGAAGACGCAGAACCAGGTGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGAA 6013818 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | ||| || | ||||| || ||| | || |||||||| ||||| || || Sbjct 6013819 AGAGTTCTGCCATCTTCCAATTGTTTGCCGGCGAAAATCAGACGCTGTTGATCCGGTGGA 6013878 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || ||||| ||||| |||||| || || | ||||| |||||| | ||| ||||| Sbjct 6013879 ATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCGATGGTGTCTGAAGCT-TCGAC 6013937 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||| | ||||| || || |||||||| || ||||| ||||| Sbjct 6013938 TTCGAGGGTAATGGTTTTACCAGTGAGAGTTTTCACGAAAATTTGCAT 6013985 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||| ||||||||||| ||| | ||| | || || | |||||| ||| Sbjct 6014017 GTGGATTCTTTCTGAATGTTGTAGTCGGAAAGAGTTCTGCCGTCTTCCAACTGTTTACCA 6014076 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | ||| ||||| || ||||| || ||||| |||||| || || ||| Sbjct 6014077 GCAAAGATCAAACGTTGCTGGTCAGGAGGAATACCCTCTTTGTCTTGGATCTTAGCTTTT 6014136 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||| | ||||| | ||| || || || | ||| | ||||| || || ||||| Sbjct 6014137 ACATTTTCTATTGTGTCAGAAGCT-TCAACTTCAAGGGTGATAGTTTTACCCGTAAGAGT 6014195 Query 118721 TTTTACAAAAATCTGCATGGCT 118742 |||||||| ||||||||| || Sbjct 6014196 CTTTACAAAGATCTGCATGCCT 6014217 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || || ||||||||||| || | ||| | |||||| || || |||||| Sbjct 6014245 GTAGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCTAGTTGCTTTCCA 6014304 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | ||| || ||||| ||||| || || || || ||| || || ||| Sbjct 6014305 GCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCTTTATCTTGGATCTTAGCTTTG 6014364 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||||| ||||| | ||| || ||||| | ||| | ||||| || || || || Sbjct 6014365 ACATTTTCGATAGTGTCAGAAGCT-TCCACCTCAAGGGTGATGGTTTTTCCAGTGAGGGT 6014423 Query 118721 TTTTACAAAAATCTGCATG 118739 ||||||||| || |||||| Sbjct 6014424 TTTTACAAAGATTTGCATG 6014442 >seq4 Length=9433735 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 ||||||| |||||||||||| || |||||| |||||| |||||||| || ||| ||| Sbjct 6954754 CTTTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGA 6954695 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 |||| ||||| ||||| || || || ||||||||||| || || || || | | Sbjct 6954694 TGAGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCT 6954635 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 ||| || || | | ||| ||||||| ||| | ||||| || || || ||||| || | Sbjct 6954634 CGATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGA 6954575 Query 118729 AAATCTGCATGG 118740 | |||||||||| Sbjct 6954574 AGATCTGCATGG 6954563 >seq3 Length=10655775 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || || ||||| | ||||| |||| || || || |||||||| |||||||| | Sbjct 2297976 CCACCACGCAATCTGAGGACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGAC 2298035 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||| || ||||| |||||||| |||| | |||||||||||| || || Sbjct 2298036 AAAGTACGTCCATCTTCCAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGG 2298095 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| || || || || ||| ||| || | |||| |||||| | ||| || Sbjct 2298096 ATGCCTTCTTTATCCTGGATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACT 2298155 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || | || | || || ||||||| || || || ||||||||||||| Sbjct 2298156 TCAAGAGTTATGGTCTTCCCGGTCAATGTCTTCACGAAAATCTGCATGG 2298204 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | |||||| ||||| ||||| || || ||| | ||| || |||||| ||||| Sbjct 2294659 GTGAAGTGTAGATTCTTTCTGAATATTATAGTCGGATAAAGTCCGTCCATCCTCTAGCTG 2294718 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || ||| | || || | || ||||||||||| ||||| || || ||| ||||| Sbjct 2294719 CTTGCCCGCGAAAATTAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGTATTTT 2294778 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 || || | ||| | ||||| | ||| |||||||| | || | ||||| || | Sbjct 2294779 CGCCTTCACGTTTTCAATCGTGTCTGAAGCT-TCGACCTCCAGCGTAATAGTTTTACCAG 2294837 Query 118714 TCAGAGTTTTTACAAAAATCTGCAT 118738 | |||||||| |||||||||||||| Sbjct 2294838 TGAGAGTTTTGACAAAAATCTGCAT 2294862 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 118541 TGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCC 118600 ||| || ||||| |||||||| ||||| | || || || || || |||||||| Sbjct 2297777 TGTGGATTCTTTCTGAATGTTATAATCAGAAAGCGTACGGCCGTCTTCAAGTTGTTTTCC 2297836 Query 118601 AGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTT 118660 ||| |||| | | ||||||||| || || || || || |||||| |||||| || Sbjct 2297837 AGCAAAGATCAATCTCTGCTGATCTGGGGGGATTCCTTCTTTGTCTTGAATTTTGGCCTT 2297896 Query 118661 AACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 || | ||||| ||||| | ||| ||| || || | || | || || || ||||| | Sbjct 2297897 GACATTTTCGATCGTGTCTGATGC-CTCAACTTCCAATGTAATGGTCTTTCCTGTCAGGG 2297955 Query 118720 TTTTTACAAAAATCTGCAT 118738 |||| ||||| |||||||| Sbjct 2297956 TTTTGACAAAGATCTGCAT 2297974 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | | ||||| || | ||||| || || ||||| || || || Sbjct 2297518 TACCACCACGTAAACGGAGAACCAAATGCAAGGTAGATTCCTTCTGAATATTATAGTCAG 2297577 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||| || || |||||||| ||| |||| | | ||||||||| || | Sbjct 2297578 AAAGTGTGCGACCATCTTCAAGTTGTTTTCCGGCGAAGATCAATCTCTGCTGATCCGGGG 2297637 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||| | |||||| || || | |||| ||||| | ||| | Sbjct 2297638 GGATTCCTTCTTTGTATTGAATTTTGGCCTTGACATTCTCGATAGTGTCTGACGCCTCAA 2297697 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || || ||||| ||||| |||||||||||||| Sbjct 2297698 TTTCCAACGTGATGGTCTTTCCTGTCAGGGTTTTGACAAAAATCTGCAT 2297746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433815405194512