Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Atta_20cephalotes_20[genbank_20GCA_5F000143395.2_202010-10-27] 2,836 sequences; 317,690,795 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq28 111 2e-19 seq32 107 2e-18 seq14 104 3e-17 seq8 100 3e-16 seq44 98.7 1e-15 seq6 96.9 4e-15 seq37 95.1 1e-14 seq4 87.8 2e-12 seq3 84.2 3e-11 >seq28 Length=4164731 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 2090169 AAAAAATTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2090228 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 2090229 TGACCACTATACTACCGAGGA 2090249 >seq32 Length=3726508 Score = 107 bits (118), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 2649810 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2649751 Query 60117 TCACCACTATACTACCGAGGA-TTGA 60141 | ||||||||||||||||||| |||| Sbjct 2649750 TGACCACTATACTACCGAGGACTTGA 2649725 >seq14 Length=6127344 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1981462 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1981403 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 1981402 TACTACCGAGGA 1981391 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||||| | ||||| |||| ||| | ||| || || ||||| ||||| || | Sbjct 6013986 TCCTCCTCGAAGACGCAGAACCAGATGAAGCGTGGATTCTTTCTGAATGTTGTAGTCGGA 6014045 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| | |||| || | ||| |||||||| || || | || |||||||| | || Sbjct 6014046 AAGAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAAACGTTGCTGGTCAGGAGG 6014105 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||| ||||| ||| || ||| | | | | ||||| | ||| || Sbjct 6014106 AATACCCTCTTTGTCTTGGATCTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAAC 6014165 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 6014166 TTCAAGGGTGATAGTTTTACCCGTAAGAGTCTTTACAAAGATCTGCAT 6014213 >seq8 Length=7313927 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 2135014 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 2134955 Query 60125 ATACTACCGAGGATT 60139 |||||| |||||||| Sbjct 2134954 ATACTATCGAGGATT 2134940 >seq44 Length=2236265 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 957638 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 957579 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 957578 TATACTATCGAGGA 957565 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 957338 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 957279 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 957278 ATACTATCGAGGA 957266 >seq6 Length=7673328 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4707330 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4707389 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 4707390 ATACTATCGAGGA 4707402 >seq37 Length=2964283 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 2531266 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 2531207 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2531206 TACTATCGAGGA 2531195 >seq4 Length=9433735 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 42996 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 43055 ||||| || |||||||| | || ||| || | || || ||||| || || ||||| ||| Sbjct 6954752 TTTTGGATGTTGTAATCGGACAAAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAGATG 6954693 Query 43056 AGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC 43115 |||||||| || || | ||| | | |||||||||| ||| || |||| || | Sbjct 6954692 AGTCGCTGTTGATCTGGCGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCG 6954633 Query 43116 ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAG 43175 | || || | || || |||| || |||||||| ||||| || || || || ||| Sbjct 6954632 ATAGTATCAGAGGCCTCTACCTCGAGGGTAATGGTTTTACCCGTAAGGGTTTTCACGAAG 6954573 Query 43176 ATTTGCAT 43183 || ||||| Sbjct 6954572 ATCTGCAT 6954565 >seq3 Length=10655775 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | ||| |||||||||||||||||||||| || ||| || | || || Sbjct 2297994 ACCAAATGGAGAGTGGATTCCTTTTGAATATTGTAATCAGACAAAGTACGTCCATCTTCC 2298053 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| ||||| || || | |||||||| || | || | || || || ||| | Sbjct 2298054 AGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCTTTATCCTGG 2298113 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || ||| ||| | || | | ||||| | || || || | || ||||| || Sbjct 2298114 ATCTTTGCTTTTACGTTCTCGATGGTGTCAGAAGCCTCAACTTCAAGAGTTATGGTCTTC 2298173 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || || || ||||| Sbjct 2298174 CCGGTCAATGTCTTCACGAAAATCTGCAT 2298202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571797329066080